View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1963R-Insertion-12 (Length: 720)
Name: NF1963R-Insertion-12
Description: NF1963R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963R-Insertion-12 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 696; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 9 - 720
Target Start/End: Original strand, 2392311 - 2393022
Alignment:
| Q |
9 |
gtatttgcatggccttagacccaagtcattttaagaggggggtatcgaggtatatttgatacgatggtcacaacccaggcatgtttgctagctcaagacc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392311 |
gtatttgcatggccttagacccaagtcattttaagaggggggtatcgaggtatatttgatacgatggtcacaacccaggcatgtttgctagctcaagacc |
2392410 |
T |
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| Q |
109 |
gtacaagcttttggtgaagttgcaaacttgattaagatatgcagtagttgaagaataacagcatacaaattacaatagtatgatccccgtaaactaagta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2392411 |
gtacaagcttttggtgaagttgcaaacttgattaagatatgcagtagttgaagaataacagcatacaaattacaatagtatgatccccttaaactaagta |
2392510 |
T |
|
| Q |
209 |
actcttcattactaatccacacttaatggcctttacagatattttatcgactttcaaataaggtattttaatgactttggtgacaaggaaatggtgtatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392511 |
actcttcattactaatccacacttaatggcctttacagatattttatcgactttcaaataaggtattttaatgactttggtgacaaggaaatggtgtatg |
2392610 |
T |
|
| Q |
309 |
ttgatatttgcaaatcgctacttcacgcaaagttcaactcctaaaaaacagcgtaaattcaaagcacaactcaaaataatgtgctcaattttactgcacc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392611 |
ttgatatttgcaaatcgctacttcacgcaaagttcaactcctaaaaaacagcgtaaattcaaagcacaactcaaaataatgtgctcaattttactgcacc |
2392710 |
T |
|
| Q |
409 |
tgcaaggtgaattactattgaatttgaaactatatgtttatcgttgaggtgattaatactttaatatttcaaaacttacatgtaccaaaaaatatttcaa |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392711 |
tgcaaggtgaattactattgaatttgaaactatatgtttatcgttgagatgattaatactttaatatttcaaaacttacatgtaccaaaaaatatttcaa |
2392810 |
T |
|
| Q |
509 |
agatactttggtcaggaagacagcttatgtgatttgatttagcttctcttctacaggctcaatacaccgagacaacaccatttcaagtggacttaggtcg |
608 |
Q |
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| T |
2392811 |
agatactttggtcaggaagacagcttatgtgatttgatttagcttctcttctacaagctcaatacaccgagacaacaccatttcaagtggacttaggtcg |
2392910 |
T |
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| Q |
609 |
catataaaactcttgttgtctgtcattatacctgtcactcgggtctgcaaaggaagcagccattcgttgtagaccttgagtaaactgctcctcgataaga |
708 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392911 |
catataaaactcttgttgtccgtcattatacctgtcactcgggtctgcaaaggaagcagccattcgttgtagaccttgagtaaactgctcctcgataaga |
2393010 |
T |
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| Q |
709 |
ctccagtgtagt |
720 |
Q |
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|||||||||||| |
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| T |
2393011 |
ctccagtgtagt |
2393022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 363 - 588
Target Start/End: Complemental strand, 2801226 - 2801006
Alignment:
| Q |
363 |
aaattcaaagcacaactcaaaat-aatgtgctcaattttactgcacctgcaaggtgaattactattgaatttgaaactatatgtttatcgttgaggtgat |
461 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| | |||||||| || ||||||||||| ||| |||| ||| || || | || |
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| T |
2801226 |
aaattcaaagcacaactcaaaatgaatgtgctcaattttactgtatctgcaaggagagttactattgaa------acttaatgtctatacttaagataat |
2801133 |
T |
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| Q |
462 |
taatactttaatatttcaaaacttacatgtaccaaaaaatatttcaaagatactttggtcaggaagacagcttatgtgatttgatttagcttctcttcta |
561 |
Q |
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||||| ||| ||||||||||||| ||| |||||||||||||||| ||||||||||||| || |||||||| |||||||| ||| |||||||||||||||| |
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| T |
2801132 |
taataatttcatatttcaaaactgacacgtaccaaaaaatattttaaagatactttggccaagaagacaggttatgtgacttgctttagcttctcttcta |
2801033 |
T |
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| Q |
562 |
caggctcaatacaccgagacaacacca |
588 |
Q |
| |
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|| ||||||| |||||| ||||||||| |
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| T |
2801032 |
caagctcaatgcaccgatacaacacca |
2801006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 617 - 720
Target Start/End: Complemental strand, 2800953 - 2800850
Alignment:
| Q |
617 |
actcttgttgtctgtcattatacctgtcactcgggtctgcaaaggaagcagccattcgttgtagaccttgagtaaactgctcctcgataagactccagtg |
716 |
Q |
| |
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||||||||| ||| |||||||||||||||| | || ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |
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| T |
2800953 |
actcttgttctcttccattatacctgtcactagcgtacgcaaaggaagcagccattcattgtagaccttgtttaaactgctcctcgacaagactccagtg |
2800854 |
T |
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| Q |
717 |
tagt |
720 |
Q |
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|||| |
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| T |
2800853 |
tagt |
2800850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 86 - 265
Target Start/End: Complemental strand, 2801483 - 2801303
Alignment:
| Q |
86 |
ggcatgtttgctagctcaagaccgtacaagcttttggtgaagttgcaaacttgattaagatatgcagtagt-------tgaagaataacagcatacaaat |
178 |
Q |
| |
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|||||| | ||| ||| |||||| ||||||||| ||||||| |||||||||||||| |||| ||| |||| |||||||||||||||| ||||| |
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| T |
2801483 |
ggcatgctagcttgctaaagaccatacaagcttctggtgaacttgcaaacttgattgggataggcaatagtgaccccttgaagaataacagcat-caaat |
2801385 |
T |
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| Q |
179 |
tacaatagtatgatccccgtaaactaagtaactcttcattactaatccacacttaatggcctttacagata-ttttatcgactttcaa |
265 |
Q |
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| T |
2801384 |
t------gtatgatctccataaactaagcaactcttcattactattccacactcaatagccttttcaggtacttttatcgattttcaa |
2801303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 363 - 588
Target Start/End: Complemental strand, 4250540 - 4250320
Alignment:
| Q |
363 |
aaattcaaagcacaactcaaaat-aatgtgctcaattttactgcacctgcaaggtgaattactattgaatttgaaactatatgtttatcgttgaggtgat |
461 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| | |||||||| || ||||||||||| ||| |||| ||| ||||| | || |
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| T |
4250540 |
aaattcaaagcacaactcaaaatgaatgtgctcaattttactgtatctgcaaggagagttactattgaa------acttaatgtctatacttgagataat |
4250447 |
T |
|
| Q |
462 |
taatactttaatatttcaaaacttacatgtaccaaaaaatatttcaaagatactttggtcaggaagacagcttatgtgatttgatttagcttctcttcta |
561 |
Q |
| |
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||||| ||| ||||||||||||| ||| ||||||||||||||| ||||||||||||| || |||||||| |||||||| ||| |||||||||||||||| |
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| T |
4250446 |
taataatttcatatttcaaaactgacacgtaccaaaaaatattataaagatactttggccaagaagacaggttatgtgacttgctttagcttctcttcta |
4250347 |
T |
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| Q |
562 |
caggctcaatacaccgagacaacacca |
588 |
Q |
| |
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|| ||||||| |||||| ||||||||| |
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| T |
4250346 |
caagctcaatgcaccgatacaacacca |
4250320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 617 - 720
Target Start/End: Complemental strand, 4250267 - 4250164
Alignment:
| Q |
617 |
actcttgttgtctgtcattatacctgtcactcgggtctgcaaaggaagcagccattcgttgtagaccttgagtaaactgctcctcgataagactccagtg |
716 |
Q |
| |
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||||||||| ||| |||||||||||||||| | || ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |
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| T |
4250267 |
actcttgttctctaccattatacctgtcactagcgtacgcaaaggaagcagccattcattgtagaccttgtttaaactgctcctcgacaagactccagtg |
4250168 |
T |
|
| Q |
717 |
tagt |
720 |
Q |
| |
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|||| |
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|
| T |
4250167 |
tagt |
4250164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 86 - 265
Target Start/End: Complemental strand, 4250797 - 4250617
Alignment:
| Q |
86 |
ggcatgtttgctagctcaagaccgtacaagcttttggtgaagttgcaaacttgattaagatatgcagtagt-------tgaagaataacagcatacaaat |
178 |
Q |
| |
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|||||| | ||| ||| |||||| ||||||||| ||||||| ||| |||||||||| |||| ||| |||| |||||||||||||||| ||||| |
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| T |
4250797 |
ggcatgctggcttgctaaagaccatacaagcttctggtgaacttgtaaacttgattgggataggcaatagtgacaccttgaagaataacagcat-caaat |
4250699 |
T |
|
| Q |
179 |
tacaatagtatgatccccgtaaactaagtaactcttcattactaatccacacttaatggcctttacagata-ttttatcgactttcaa |
265 |
Q |
| |
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| |||||||| || ||||||||| |||||||||||||||||||||||| ||| |||||| ||| || ||||||||| |||||| |
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| T |
4250698 |
t------gtatgatctccttaaactaagcaactcttcattactaatccacactcaatagccttttcaggtacttttatcgattttcaa |
4250617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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