View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1963R-Insertion-13 (Length: 945)
Name: NF1963R-Insertion-13
Description: NF1963R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963R-Insertion-13 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 248 - 876
Target Start/End: Original strand, 7579913 - 7580546
Alignment:
| Q |
248 |
atcgaatttatgatattcattggatgcaaatattgatgctaaaccctagaaatgtgaaacgtatatacnnnnnnnnnnntcacatacctacccaaaaaac |
347 |
Q |
| |
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| T |
7579913 |
atcgacttcatgatattcattggatgcaaatattgatgctaaaccctagaaatgtgaaacatacaaa---aaaaaaaaatcgcatacctacccaaaaaac |
7580009 |
T |
|
| Q |
348 |
aggacaaaaatcacatagagaatgataacaacaaactgattgaacaacttgtctaggtttatcggaagtgcctgcaaattgtacgtttcaaagccaacaa |
447 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7580010 |
aggacaaaaatcacatagagaatgataacaacaaactgattgaacaacttgtctaggtttatcggaagtacctgcaaattgtacgtttcaaagccaacaa |
7580109 |
T |
|
| Q |
448 |
atattacaagttagacatgatttaggaatcaaacacaacacaaccaatgattcaacataaaacatacaatatacccacccataacataacctctaccatc |
547 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7580110 |
atattacaagttagacatgatttaggaatcaaacacaacacaaccaatgattcaacataaaacatacaatat----acccataacataacctctaccatc |
7580205 |
T |
|
| Q |
548 |
caagaagctgattcaacaattagagctagcaaatgcaatcaaccaaacacta-aatgcaatcgaacaaggtattctactcggcctaattatannnnnnnc |
646 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| || || || || ||||||||||||||||||||||||||||| |
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| T |
7580206 |
caagaagctgattcaacaattagagctagcaaatgcaatcaaccatgcattatgatcacttcaaacaaggtattctactcggcctaattatatttttttt |
7580305 |
T |
|
| Q |
647 |
atttaacac-tttgttttaatttaatcaccaaacgctaattgc-----------aacaaattacatactcttgccaaaaacttgcatgtgagtgaaaatt |
734 |
Q |
| |
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||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||| | |||||||||||||||||||||||||| ||||| |
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| T |
7580306 |
atttaacacttttgttttaatttaatcacgaaacactaattgcaagaggttattaacaaattacagattcttgccaaaaacttgcatgtgagtg-aaatt |
7580404 |
T |
|
| Q |
735 |
catcgattgagttataataatcactagaacagaagaatagtgatacattgaccatctcatatggcaaacccttcattctacacctgcatgtgacatgttt |
834 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7580405 |
catcgattgagttataatactcactagaacagaagagtagtgatacattgaccatcccatatggcaaaccctgcattctacacctgcatgtgacatgttt |
7580504 |
T |
|
| Q |
835 |
ggtgaaagagagagaaagggaatgataatagggaagaggaat |
876 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
7580505 |
ggtgaaagagagagaaagggaatgataatagggaagaggaat |
7580546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 7579706 - 7579913
Alignment:
| Q |
7 |
cagttaaatgcataaaccaaccacatcaataattcatatattagaaggatttgcacttcaaagttcatacgtcacttttccaacattataagcaatcgga |
106 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7579706 |
cagttaaatgcataaaccaaccacgtcaataattcatatattagaaggatttgcacttcaaagttcatacgtcacttttccaacattataagcaatcgga |
7579805 |
T |
|
| Q |
107 |
taacatattatcattaaaagttgtacaattagccatacaaagttggtagcaacaggtcgtatctactacacattgcttgaggaataacctgaaatcagag |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7579806 |
taacatattatcattaaaagttgtacaattagccatacaaagctggtagcaacaggtcgtatctactacaaattgcttgaggaataacctgaaatcagag |
7579905 |
T |
|
| Q |
207 |
aggaaaaa |
214 |
Q |
| |
|
|||||||| |
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| T |
7579906 |
aggaaaaa |
7579913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 892 - 944
Target Start/End: Original strand, 7580560 - 7580613
Alignment:
| Q |
892 |
tgtcacatgtgatagtatatgagt-gtatggaagaaagggtgtcaacccataat |
944 |
Q |
| |
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||||||||| |||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
7580560 |
tgtcacatgggatagtatatgagtggtatgaaaaaaagggtgtcaacccataat |
7580613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 772 - 872
Target Start/End: Original strand, 6415876 - 6415977
Alignment:
| Q |
772 |
tagtgatacattgaccatctcatatggcaaacccttcattctacacctgca-tgtgacatgtttggtgaaagagagagaaagggaatgataatagggaag |
870 |
Q |
| |
|
||||||||||||||||| | ||| ||| ||||||| |||||||||| || ||| ||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
6415876 |
tagtgatacattgaccaccccatgtggtaaaccctccattctacacacccaatgtcgcatgtttggtggaagagagagaaagggaatgataaaagggaag |
6415975 |
T |
|
| Q |
871 |
ag |
872 |
Q |
| |
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|| |
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|
| T |
6415976 |
ag |
6415977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 48668247 - 48668208
Alignment:
| Q |
166 |
tatctactacacattgcttgaggaataacctgaaatcaga |
205 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
48668247 |
tatctactacaaattgcttgcggaataacctgaaatcaga |
48668208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 862
Target Start/End: Original strand, 50493248 - 50493313
Alignment:
| Q |
797 |
ggcaaacccttcattctacacctgcatgtgacatgtttggtgaaagagagagaaagggaatgataa |
862 |
Q |
| |
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||||||| || |||||||||||| ||| | ||||||||||| ||| |||||||||| |||||||| |
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| T |
50493248 |
ggcaaactctccattctacacctccatatagcatgtttggtggaagtgagagaaaggaaatgataa |
50493313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 772 - 852
Target Start/End: Original strand, 17110682 - 17110762
Alignment:
| Q |
772 |
tagtgatacattgaccatctcatatggcaaacccttcattctacacctgcatgtgacatgtttggtgaaagagagagaaag |
852 |
Q |
| |
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||||||||||||||||| || ||||| ||||| | ||||||||| || | ||||||||||||||||||||||||||||| |
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| T |
17110682 |
tagtgatacattgaccacctaatatgacaaactttgcattctacatctctacgtgacatgtttggtgaaagagagagaaag |
17110762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 772 - 869
Target Start/End: Complemental strand, 31939720 - 31939625
Alignment:
| Q |
772 |
tagtgatacattgaccatctcatatggcaaacccttcattctacacctgcatgtgacatgtttggtgaaagagagagaaagggaatgataatagggaa |
869 |
Q |
| |
|
|||||| ||||||| |||| |||||| ||||||| |||||||||| | |||| |||||||||||| || | ||||||| |||||||||| |||||| |
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|
| T |
31939720 |
tagtgaaacattgatcatcccatatgataaaccctccattctacacgt--atgtaacatgtttggtggaaaaaagagaaaaggaatgataaaagggaa |
31939625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 762 - 872
Target Start/End: Complemental strand, 37956193 - 37956090
Alignment:
| Q |
762 |
aacagaagaatagtgatacattgaccatctcatatggcaaacccttcattctacacctgcatgtgacatgtttggtgaaagagagagaaagggaatgata |
861 |
Q |
| |
|
|||| |||| ||||||||||||||||| | ||||||||||| ||||||||||||| ||||| ||||| || ||| |||||||| ||||||||| |
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|
| T |
37956193 |
aacaaaagagtagtgatacattgaccactttatatggcaaacacttcattctacac-------tgacaagtttgatggaagggagagaaatggaatgata |
37956101 |
T |
|
| Q |
862 |
atagggaagag |
872 |
Q |
| |
|
| || |||||| |
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|
| T |
37956100 |
aaagagaagag |
37956090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 798 - 868
Target Start/End: Complemental strand, 46783697 - 46783626
Alignment:
| Q |
798 |
gcaaacccttcattctacacctgcatgtgacatgtt-tggtgaaagagagagaaagggaatgataataggga |
868 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||| ||| | ||||||||||||||||||||||| ||||| |
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|
| T |
46783697 |
gcaaaccctcaattctacacccacatgtgacctgttctgggggaagagagagaaagggaatgataaaaggga |
46783626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 772 - 872
Target Start/End: Complemental strand, 3760206 - 3760109
Alignment:
| Q |
772 |
tagtgatacattgaccatctcatatggcaaacccttcattctacacctgcatgtgacatgtttggtgaaagagagagaaagggaatgataatagggaaga |
871 |
Q |
| |
|
||||||||||||| ||| | || ||||||| ||| ||||||||||| |||||| ||||||||||| |||| |||| ||||||||||| | |||||| |
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|
| T |
3760206 |
tagtgatacattgtccaccctatgtggcaaatcctctattctacacctccatgtggcatgtttggtg---gagatagaaggggaatgataaaaaggaaga |
3760110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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