View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1963R-Insertion-4 (Length: 98)
Name: NF1963R-Insertion-4
Description: NF1963R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963R-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 29199429 - 29199458
Alignment:
| Q |
9 |
ccttccataactgaaaatcaaatcccgctt |
38 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29199429 |
ccttccataactgaaaatcaaatcccgctt |
29199458 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 12652476 - 12652447
Alignment:
| Q |
9 |
ccttccataactgaaaatcaaatcccgctt |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
12652476 |
ccttccataactgaaaatcaaatcccgctt |
12652447 |
T |
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