View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1963R-Insertion-6 (Length: 280)

Name: NF1963R-Insertion-6
Description: NF1963R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1963R-Insertion-6
NF1963R-Insertion-6
[»] chr4 (1 HSPs)
chr4 (38-159)||(17558839-17558960)
[»] scaffold0519 (1 HSPs)
scaffold0519 (182-277)||(951-1046)
[»] chr8 (1 HSPs)
chr8 (182-277)||(11233378-11233473)
[»] chr5 (1 HSPs)
chr5 (69-159)||(16222641-16222731)
[»] chr1 (3 HSPs)
chr1 (69-159)||(38236324-38236414)
chr1 (69-159)||(6923464-6923554)
chr1 (53-93)||(39072646-39072686)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 17558960 - 17558839
Alignment:
Q  38 attaaaataagaattgttaacatgcatcggtttgtcacataagttgtattaatttcatttgatatagtagaatgaatttcatattatctttttggctata 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17558960 attaaaataagaattgttaacatgcatcggtttgtcacataagttgcattaatttcatttgatatagtagaatgaatttcatattatctttttggctata 17558861  T
Q  138 tatgacccgtgcggcagcacgg 159  Q
    ||||||||||||||||||||||    
T  17558860 tatgacccgtgcggcagcacgg 17558839  T

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Target: scaffold0519 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 1046 - 951
Alignment:
Q  182 ttcaatttagtcatcactgaatcacaacaatctcactctaccgaaatatataagcttctcaaaatcaactttaaatataactaactcattcttcat 277  Q
    ||||||||| ||||||||||||| ||| |||||||||  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1046 ttcaatttaatcatcactgaatcccaataatctcactacaccgaaccatataagcttctcaaaatcaactttaaatataactaactcattcttcat 951  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 11233378 - 11233473
Alignment:
Q  182 ttcaatttagtcatcactgaatcacaacaatctcactctaccgaaatatataagcttctcaaaatcaactttaaatataactaactcattcttcat 277  Q
    ||||||||| ||||||||||||| ||| |||||||||  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11233378 ttcaatttaatcatcactgaatcccaataatctcactacaccgaaccatataagcttctcaaaatcaactttaaatataactaactcattcttcat 11233473  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 16222641 - 16222731
Alignment:
Q  69 ttgtcacataagttgtattaatttcatttgatatagtagaatgaatttcatattatctttttggctatatatgacccgtgcggcagcacgg 159  Q
    ||||||||||||||||||||||| | ||||| ||| ||||||||| ||||  | || ||||| ||||||||||||  ||||||||||||||    
T  16222641 ttgtcacataagttgtattaattacgtttgacatattagaatgaagttcaactaatgtttttagctatatatgacatgtgcggcagcacgg 16222731  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 38236414 - 38236324
Alignment:
Q  69 ttgtcacataagttgtattaatttcatttgatatagtagaatgaatttcatattatctttttggctatatatgacccgtgcggcagcacgg 159  Q
    ||||||||||||||||||||||| | ||||| ||| ||||||||| ||||  | || ||||| |||||||||||||||||| || ||||||    
T  38236414 ttgtcacataagttgtattaattacgtttgacatattagaatgaagttcaactaatgtttttagctatatatgacccgtgctgccgcacgg 38236324  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 6923464 - 6923554
Alignment:
Q  69 ttgtcacataagttgtattaatttcatttgatatagtagaatgaatttcatattatctttttggctatatatgacccgtgcggcagcacgg 159  Q
    ||||| ||||||||||||||||| | ||||| ||| ||||||||| ||||  | || ||||| |||||||||||||||||| || ||||||    
T  6923464 ttgtcgcataagttgtattaattacgtttgacatattagaatgaagttcaactaatatttttagctatatatgacccgtgctgctgcacgg 6923554  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 39072686 - 39072646
Alignment:
Q  53 gttaacatgcatcggtttgtcacataagttgtattaatttc 93  Q
    ||||| |||||||  ||||||||||||||||||||||||||    
T  39072686 gttaaaatgcatcattttgtcacataagttgtattaatttc 39072646  T

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