View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1963R-Insertion-7 (Length: 350)

Name: NF1963R-Insertion-7
Description: NF1963R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1963R-Insertion-7
NF1963R-Insertion-7
[»] chr2 (1 HSPs)
chr2 (9-350)||(29238522-29238863)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 29238522 - 29238863
Alignment:
Q  9 gccaccatcgacatgagcaccagcagcaaacccatagaaatcggttataagtttaccaatttcgacaatctgttcgaagacatggttagggatagggtta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29238522 gccaccatcgacatgagcaccagcagcaaacccatagaaatcggttataagtttaccaatttcgacaatctgttcgaagacatggttagggatagggtta 29238621  T
Q  109 agaagcatctcaatgttaatcttcttgtcatagtaattaacaacatcatttttgagaatttcaagtatcttatcagccacgaatctgacagtactgagcg 208  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29238622 agaagcatctcaatgttaatcttcttgtcatagtaattaacagcatcatttttgagaatttcaagtatcttatcagccacgaatctgacagtactgagcg 29238721  T
Q  209 gctgaccggcaagaggctgaccagggcgtggctgctggataagagtgagcagattgttgtaggccgcgcgggttttgttacttttaggttggtagaggcc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29238722 gctgaccggcaagaggctgaccagggcgtggctgctggataagagtgagcagattgttgtaggccgcgcgggttttgttagttttaggttggtagaggcc 29238821  T
Q  309 gtcgtcgacgaccgggaagacgaacttttcttcttcttcttc 350  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29238822 gtcgtcgacgaccgggaagacgaacttttcttcttcttcttc 29238863  T

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