View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1963R-Insertion-8 (Length: 360)

Name: NF1963R-Insertion-8
Description: NF1963R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1963R-Insertion-8
NF1963R-Insertion-8
[»] chr1 (3 HSPs)
chr1 (9-360)||(44128157-44128508)
chr1 (9-360)||(44132362-44132713)
chr1 (9-360)||(44140784-44141135)
[»] chr7 (11 HSPs)
chr7 (166-352)||(5309685-5309871)
chr7 (166-355)||(5283857-5284046)
chr7 (166-352)||(5290081-5290267)
chr7 (166-352)||(5302048-5302234)
chr7 (166-355)||(5314499-5314688)
chr7 (12-84)||(46707179-46707251)
chr7 (9-58)||(5310282-5310331)
chr7 (10-58)||(5284193-5284241)
chr7 (10-58)||(5314996-5315044)
chr7 (10-58)||(5289886-5289934)
chr7 (10-58)||(5302381-5302429)
[»] chr5 (9 HSPs)
chr5 (167-352)||(1491587-1491772)
chr5 (161-352)||(1504351-1504542)
chr5 (162-352)||(1481697-1481887)
chr5 (166-352)||(1477586-1477772)
chr5 (166-319)||(1485466-1485621)
chr5 (168-360)||(1496789-1496981)
chr5 (9-114)||(1504807-1504911)
chr5 (19-58)||(1482078-1482117)
chr5 (19-58)||(1477884-1477923)
[»] chr2 (2 HSPs)
chr2 (166-348)||(24165436-24165618)
chr2 (13-54)||(24163982-24164023)
[»] chr3 (3 HSPs)
chr3 (170-265)||(37863716-37863811)
chr3 (170-226)||(37859726-37859782)
chr3 (170-226)||(39029635-39029691)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 44128508 - 44128157
Alignment:
Q  9 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44128508 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44128409  T
Q  109 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128408 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44128309  T
Q  209 gtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcaggg 308  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||    
T  44128308 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcaggg 44128209  T
Q  309 ccttctgccctttgagcattgcgaatttcagacacattcaccatattaatat 360  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  44128208 ccttctgccctttgagcattgcgaatttcagacacactaaccatattgatat 44128157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 44132713 - 44132362
Alignment:
Q  9 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44132713 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44132614  T
Q  109 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132613 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44132514  T
Q  209 gtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcaggg 308  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||    
T  44132513 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcaggg 44132414  T
Q  309 ccttctgccctttgagcattgcgaatttcagacacattcaccatattaatat 360  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  44132413 ccttctgccctttgagcattgcgaatttcagacacactaaccatattgatat 44132362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 44141135 - 44140784
Alignment:
Q  9 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44141135 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44141036  T
Q  109 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141035 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44140936  T
Q  209 gtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcaggg 308  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||    
T  44140935 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcaggg 44140836  T
Q  309 ccttctgccctttgagcattgcgaatttcagacacattcaccatattaatat 360  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  44140835 ccttctgccctttgagcattgcgaatttcagacacactaaccatattgatat 44140784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 166 - 352
Target Start/End: Complemental strand, 5309871 - 5309685
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || |||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5309871 aatacttacacatgcgctgaaatttctccttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacaca 5309772  T
Q  266 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagacacattcaccat 352  Q
    ||| ||||| |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||    
T  5309771 atttgctggatttgcagtaccaatggccaaaatagttgcaggaccttctgctctttgagcattacgaatttcagacacactcaccat 5309685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 166 - 355
Target Start/End: Complemental strand, 5284046 - 5283857
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  5284046 aatacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaaagtaaaaatcaggatacgtgctttgttcaacaca 5283947  T
Q  266 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagacacattcaccatatt 355  Q
    ||| ||||| |||||||| ||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||    
T  5283946 atttgctggatttgcagtcccaatggccaagatggttgcagggccttctgccctttgagctttacgaatttcagacacactcaccatatt 5283857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 166 - 352
Target Start/End: Original strand, 5290081 - 5290267
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  5290081 aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacaca 5290180  T
Q  266 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagacacattcaccat 352  Q
    ||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||    
T  5290181 atttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaatttcagacacactcaccat 5290267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 166 - 352
Target Start/End: Complemental strand, 5302234 - 5302048
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  5302234 aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacaca 5302135  T
Q  266 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagacacattcaccat 352  Q
    ||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||    
T  5302134 atttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaatttcagacacactcaccat 5302048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 166 - 355
Target Start/End: Complemental strand, 5314688 - 5314499
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || ||||||||||||||||||   ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  5314688 aatacttacacatgcgctgaaatttctctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttcaacaca 5314589  T
Q  266 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagacacattcaccatatt 355  Q
    ||| ||||| |||||||| ||||||||||| || |||||||| |||||||| |||||||| || ||||||||||||||| ||||||||||    
T  5314588 atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacactcaccatatt 5314499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 46707179 - 46707251
Alignment:
Q  12 tgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagtt 84  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||    
T  46707179 tgttaggtacatgtatctcctcttgatcatagatttatcacctgaaggtaattatgataggatgatattagtt 46707251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 5310331 - 5310282
Alignment:
Q  9 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5310331 ctctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5310282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 5284241 - 5284193
Alignment:
Q  10 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5284241 tctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5284193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 5315044 - 5314996
Alignment:
Q  10 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5315044 tctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5314996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 5289886 - 5289934
Alignment:
Q  10 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  5289886 tctgttagatacatgtatctcctcttgatcatggatttatcacctgaag 5289934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 5302429 - 5302381
Alignment:
Q  10 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  5302429 tctgttagatacatgtatctcctcttgatcatggatttatcacctgaag 5302381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 167 - 352
Target Start/End: Complemental strand, 1491772 - 1491587
Alignment:
Q  167 atacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaa 266  Q
    |||||||||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||     
T  1491772 atacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacag 1491673  T
Q  267 ttggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagacacattcaccat 352  Q
    || ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||| |||||||    
T  1491672 tttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagatacactcaccat 1491587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 161 - 352
Target Start/End: Complemental strand, 1504542 - 1504351
Alignment:
Q  161 gaaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttca 260  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  1504542 gaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttca 1504443  T
Q  261 acacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagacacattcaccat 352  Q
    |||||||| | ||| |||||||| ||||||||||| || |||||||| |||||||| || ||||| |||||||||||||| ||| |||||||    
T  1504442 acacaatttggtggatttgcagtgccaatggccaaaatggttgcaggaccttctgctctctgagccttgcgaatttcagatacactcaccat 1504351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 162 - 352
Target Start/End: Complemental strand, 1481887 - 1481697
Alignment:
Q  162 aaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaa 261  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    || || ||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  1481887 aaaaagtacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgctttgttcaa 1481788  T
Q  262 cacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagacacattcaccat 352  Q
    |||| || ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||| |||||||    
T  1481787 cacagtttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagatacactcaccat 1481697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 166 - 352
Target Start/End: Complemental strand, 1477772 - 1477586
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    ||||||||||||||||||| ||||| ||||| ||||||   ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  1477772 aatacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcaggatatgtgctttgttcaacaca 1477673  T
Q  266 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagacacattcaccat 352  Q
     |||||||| |||||||| ||||||||||  || || ||||||||||||||||| ||||| |||||||||||||| ||| |||||||    
T  1477672 gttggctggatttgcagtgccaatggccatgatggtggcagggccttctgccctctgagccttgcgaatttcagatacactcaccat 1477586  T

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Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 166 - 319
Target Start/End: Complemental strand, 1485621 - 1485466
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagta--gaaatcaggatatgtgctttgttcaaca 263  Q
    |||||||||| ||||| || ||||||||| ||||||  |||||||| || ||||||| |||| | |||||  ||||||||||||||||||||||||||||    
T  1485621 aatacttacaaatgcgctgaaatttctctctgagttgcgtcttgtgctcgctatttgcgattctgaagtatagaaatcaggatatgtgctttgttcaaca 1485522  T
Q  264 caattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccct 319  Q
    ||||| | ||| ||||||||||| |||||||| ||  |||||||||||||||||||    
T  1485521 caatttggtggatttgcagttcctatggccaagatgattgcagggccttctgccct 1485466  T

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Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 168 - 360
Target Start/End: Complemental strand, 1496981 - 1496789
Alignment:
Q  168 tacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaat 267  Q
    |||| ||| ||||| |||||||||| ||| | |||||||||||| ||| | ||||||| | | || |||| ||||||||||||||||||||||| |||||    
T  1496981 tactaacatatgcgctggaatttcttttttaattcagtcttgtgctcattgtttgtgactctgaaatagagatcaggatatgtgctttgttcaatacaat 1496882  T
Q  268 tggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagacacattcaccatattaatat 360  Q
    | | ||| |||||||| ||||| || || ||||||| |||||||||||||||||||||  | ||||||||||| ||| | ||||| |||||||    
T  1496881 ttgttggatttgcagtgccaatagctaagatagttgtagggccttctgccctttgagcccttcgaatttcagatacagttaccatcttaatat 1496789  T

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Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 1504911 - 1504807
Alignment:
Q  9 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||| ||||    
T  1504911 ctctgttaggtacatgtatcttctcttaatcatagatttatcacctgaaggtaattatgaagagatgatattagttcaac-aaatttgggtgatacgaaa 1504813  T
Q  109 ccaatg 114  Q
     |||||    
T  1504812 tcaatg 1504807  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 1482117 - 1482078
Alignment:
Q  19 tacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  1482117 tacatgtatctcctcttgatcatagatttatcacctgaag 1482078  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 1477923 - 1477884
Alignment:
Q  19 tacatatatctcctcttgatcatagatttatcacctgaag 58  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  1477923 tacatgtatctcctcttgatcatggatttatcacctgaag 1477884  T

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Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 166 - 348
Target Start/End: Original strand, 24165436 - 24165618
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||| |||||||| ||||| ||||||||||   ||||||| || || ||||||| | |||||||||||||||||||||||||||||||||||||    
T  24165436 aatacttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgctttgttcaacaca 24165535  T
Q  266 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagacacattca 348  Q
     || | ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||    
T  24165536 gtttggtggatttgcagtgccaatggccaagatagttgcagggccttctgccctttgagccttacgaatttcagacaccttca 24165618  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 24163982 - 24164023
Alignment:
Q  13 gttaggtacatatatctcctcttgatcatagatttatcacct 54  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  24163982 gttaggtacatgtatctcctcttgatcatagttttatcacct 24164023  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 37863716 - 37863811
Alignment:
Q  170 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||| |||||||| ||| |||||||||| ||||||||||| ||||||||    ||||| || ||||||||||| || || ||||||||    
T  37863716 cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacaca 37863811  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
Q  170 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgat 226  Q
    |||||||||||| || ||||| |||||||| |||||||| |||||||| ||||||||    
T  37859726 cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat 37859782  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 39029691 - 39029635
Alignment:
Q  170 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgat 226  Q
    |||||||||||| || ||||| ||||| || || |||||||| ||||||||||||||    
T  39029691 cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat 39029635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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