View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1963_high_4 (Length: 272)
Name: NF1963_high_4
Description: NF1963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 2392553 - 2392311
Alignment:
| Q |
13 |
aatatctgtaaaggccattaagtgtggattagtaatgaagagttacttagtttaaggggatcatactattgtaatttgtatgctgttattcttcaactac |
112 |
Q |
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| T |
2392553 |
aatatctgtaaaggccattaagtgtggattagtaatgaagagttacttagtttaaggggatcatactattgtaatttgtatgctgttattcttcaactac |
2392454 |
T |
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| Q |
113 |
tgcatatcttaatcaagtttgcaacttcaccaaaagcttgtacggtcttgagctagcaaacatgcctgggttgtgaccatcgtatcaaatatacctcgat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392453 |
tgcatatcttaatcaagtttgcaacttcaccaaaagcttgtacggtcttgagctagcaaacatgcctgggttgtgaccatcgtatcaaatatacctcgat |
2392354 |
T |
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| Q |
213 |
acccccctcttaaaatgacttgggtctaaggccatgcaaatac |
255 |
Q |
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| T |
2392353 |
acccccctcttaaaatgacttgggtctaaggccatgcaaatac |
2392311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 2801327 - 2801483
Alignment:
| Q |
22 |
aaaggccattaagtgtggattagtaatgaagagttacttagtttaaggggatcatactattgtaatttgtatgctgttattcttca-------actactg |
114 |
Q |
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| T |
2801327 |
aaaggctattgagtgtggaatagtaatgaagagttgcttagtttatggagatcatac------aatttg-atgctgttattcttcaaggggtcactattg |
2801419 |
T |
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| Q |
115 |
catatcttaatcaagtttgcaacttcaccaaaagcttgtacggtcttgagctagcaaacatgcc |
178 |
Q |
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| T |
2801420 |
cctatcccaatcaagtttgcaagttcaccagaagcttgtatggtctttagcaagctagcatgcc |
2801483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 4250641 - 4250797
Alignment:
| Q |
22 |
aaaggccattaagtgtggattagtaatgaagagttacttagtttaaggggatcatactattgtaatttgtatgctgttattcttca-------actactg |
114 |
Q |
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|||||| ||| |||||||||||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||||| |||| || |
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| T |
4250641 |
aaaggctattgagtgtggattagtaatgaagagttgcttagtttaaggagatcatac------aatttg-atgctgttattcttcaaggtgtcactattg |
4250733 |
T |
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| Q |
115 |
catatcttaatcaagtttgcaacttcaccaaaagcttgtacggtcttgagctagcaaacatgcc |
178 |
Q |
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| |||| |||||||||| ||| ||||||| ||||||||| |||||| ||| ||| | |||||| |
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| T |
4250734 |
cctatcccaatcaagtttacaagttcaccagaagcttgtatggtctttagcaagccagcatgcc |
4250797 |
T |
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