View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1963_low_1 (Length: 444)

Name: NF1963_low_1
Description: NF1963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1963_low_1
NF1963_low_1
[»] chr1 (11 HSPs)
chr1 (12-430)||(6240775-6241192)
chr1 (213-361)||(19709100-19709249)
chr1 (205-361)||(47900365-47900523)
chr1 (296-376)||(15244202-15244281)
chr1 (293-387)||(15731360-15731454)
chr1 (206-376)||(39440650-39440820)
chr1 (204-261)||(19883295-19883352)
chr1 (204-265)||(33078686-33078747)
chr1 (195-271)||(1971975-1972051)
chr1 (213-354)||(15877633-15877774)
chr1 (54-161)||(39440872-39440980)
[»] chr4 (9 HSPs)
chr4 (71-361)||(4225064-4225362)
chr4 (28-194)||(7355138-7355304)
chr4 (190-361)||(12110099-12110271)
chr4 (287-376)||(7355024-7355113)
chr4 (324-387)||(10179278-10179341)
chr4 (297-387)||(30500389-30500480)
chr4 (190-376)||(50688340-50688524)
chr4 (82-141)||(12110327-12110386)
chr4 (204-248)||(5066633-5066677)
[»] chr6 (1 HSPs)
chr6 (27-361)||(14274390-14274727)
[»] chr7 (9 HSPs)
chr7 (221-376)||(16803395-16803549)
chr7 (70-261)||(2476868-2477066)
chr7 (28-129)||(26573086-26573187)
chr7 (205-376)||(29542255-29542426)
chr7 (223-375)||(984101-984254)
chr7 (213-376)||(26572832-26572995)
chr7 (204-272)||(12865904-12865972)
chr7 (324-387)||(2476792-2476855)
chr7 (216-272)||(1781025-1781081)
[»] chr2 (6 HSPs)
chr2 (289-387)||(17558454-17558553)
chr2 (190-262)||(25895489-25895560)
chr2 (205-259)||(5369804-5369858)
chr2 (204-258)||(30969605-30969659)
chr2 (204-261)||(33856129-33856186)
chr2 (324-376)||(25895375-25895427)
[»] chr3 (1 HSPs)
chr3 (217-376)||(862310-862469)
[»] chr5 (4 HSPs)
chr5 (70-194)||(17468643-17468768)
chr5 (213-258)||(20625849-20625894)
chr5 (297-376)||(23361383-23361462)
chr5 (190-261)||(27893198-27893269)
[»] chr8 (3 HSPs)
chr8 (214-261)||(25233519-25233566)
chr8 (214-264)||(30122587-30122637)
chr8 (213-265)||(7635042-7635094)
[»] scaffold0037 (1 HSPs)
scaffold0037 (190-244)||(107954-108008)


Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 430
Target Start/End: Original strand, 6240775 - 6241192
Alignment:
Q  12 tgaatatgcatcaccaaagacataggaagatgtagcataccagatcatcagtcgggttgtactattgtacgaactcatggaccccttcttatcattgatt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  6240775 tgaatatgcatcaccaaagacataggaagatgtagcataccagatcatcagtcgggttgcactattgtacgaactcattgaccccttcttatcattgatt 6240874  T
Q  112 aatgagtaagttctatgggctgacaccaattattagtagtacgatgaatagagaatatgtctggcaatgataggataagacaactcataggaaaaatgac 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6240875 aatgagtaagttctatgggctaacaccaattattagtagtacgaggaataaagaatatgtctggcaatgataggataagacaactcataggaaaaatgac 6240974  T
Q  212 aaaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtgctaggagtcctgaactttacattgtgaattgagcgaccaa 311  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6240975 aaaagggtacaacttgaagtggttgaccttgtactataaagggacaaccacatggtagtgctaggagtcctgaattttacattgtgaattgagcgaccaa 6241074  T
Q  312 gttccaactatagttagcagcactagagttctcactccatctcatcttctaaatatatgagcatgtctgctagttccttnnnnnnnnnngagttaaggtt 411  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||          |||||||||||    
T  6241075 gttccaactatagttaacagcactagagttctcactccatctcatcttctacatatatgagcatgtgtgctagttcctt-aaaaaaaaagagttaaggtt 6241173  T
Q  412 acttaggtgatgcttaaag 430  Q
    |||||||||||||||||||    
T  6241174 acttaggtgatgcttaaag 6241192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 213 - 361
Target Start/End: Original strand, 19709100 - 19709249
Alignment:
Q  213 aaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtgctaggagtcctgaactttacattg-tgaattgagcgaccaa 311  Q
    ||||||||||||||| |||||||||||||||||||| ||  |||||||||||| |||||||| | || |  || ||| ||||| ||||   |||||||||    
T  19709100 aaagggtacaacttgtagtggttgaccttgtactataaaatgacaaccacatgttagtgctaagggttc-aaaatttgcattgttgaaccaagcgaccaa 19709198  T
Q  312 gttccaactatagttagca-gcactagagttctcactccatctcatcttct 361  Q
    |||||| ||| ||||||||  || |||||||||||||||||||||||||||    
T  19709199 gttccagctagagttagcatccagtagagttctcactccatctcatcttct 19709249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 361
Target Start/End: Complemental strand, 47900523 - 47900365
Alignment:
Q  205 aaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtg-ctaggagtcctgaactttaca-ttgtgaattg 302  Q
    ||||||| |||| |||||||||  | |||||||||||  ||||| || ||||||| ||||| ||||| | | | |||||||| |||||| ||||||||||    
T  47900523 aaatgaccaaagagtacaacttataatggttgaccttacactataaaaggacaacaacatgttagtgtcaaagggtcctgaattttacacttgtgaattg 47900424  T
Q  303 agcgaccaagttccaactatagttagcagcactagagttctcactccatctcatcttct 361  Q
    ||||  ||||||||| |||  || || |||||||| ||||||||||| |||||||||||    
T  47900423 agcggtcaagttccatctagggtgagtagcactagcgttctcactccttctcatcttct 47900365  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 15244202 - 15244281
Alignment:
Q  296 tgaattgagcgaccaagttccaactatagttagcagcactagagttctcactccatctcatcttctaaatatatgagcatg 376  Q
    ||||||||| | |||||||| | |||| ||||||||||||||||||||||||||||||||||||||  ||| |||||||||    
T  15244202 tgaattgagtggccaagttc-agctatggttagcagcactagagttctcactccatctcatcttctctatagatgagcatg 15244281  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 15731360 - 15731454
Alignment:
Q  293 ttgtgaattgagcgaccaagttccaactatagttagcagcactagagttctcactccatctcatcttctaaatatatgagcatgtctgctagttc 387  Q
    |||||||||||| |  |||||| || |||  |||||||||||| |||||||||||||||||||||||||  ||| |||||||||  |||||||||    
T  15731360 ttgtgaattgagtggtcaagttgcagctagggttagcagcactggagttctcactccatctcatcttctccatagatgagcatgagtgctagttc 15731454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 376
Target Start/End: Complemental strand, 39440820 - 39440650
Alignment:
Q  206 aatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtgctaggagtcctgaactttacattgtgaattgagc 305  Q
    ||||| |||||||||||||||| ||||||||  ||| |||||| || ||||||||||||| |||||  | | ||||   | ||||||    ||||||||     
T  39440820 aatgataaaagggtacaacttgtagtggttggtcttatactataaaaggacaaccacatgttagtgtcaagggtccgatattttacacaacgaattgaga 39440721  T
Q  306 gaccaagttccaactatagttagcagcactagagttctcactccatctcatcttctaaatatatgagcatg 376  Q
    ||||||||||||  ||  ||||| |||||||||||| ||||| ||| |||||||||  ||| |||||||||    
T  39440720 gaccaagttccagttagggttaggagcactagagttttcacttcatatcatcttctccatagatgagcatg 39440650  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 19883352 - 19883295
Alignment:
Q  204 aaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaacca 261  Q
    |||||||| ||||||||||||||| |||||||| |||||||||||  | |||||||||    
T  19883352 aaaatgaccaaagggtacaacttgtagtggttggccttgtactatagaaggacaacca 19883295  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 33078686 - 33078747
Alignment:
Q  204 aaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatg 265  Q
    |||||||| |||| |||||||||| |||||||| ||||||||||  || |||||||||||||    
T  33078686 aaaatgaccaaagagtacaacttgtagtggttggccttgtactaaaaaaggacaaccacatg 33078747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 1971975 - 1972051
Alignment:
Q  195 ctcataggaaaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtg 271  Q
    |||||||| ||||| || |||||||| |||||   |||||| |||||||||||| || ||||||||||||| |||||    
T  1971975 ctcatagggaaaattaccaaagggtataacttattgtggtttaccttgtactataaaaggacaaccacatgttagtg 1972051  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 354
Target Start/End: Original strand, 15877633 - 15877774
Alignment:
Q  213 aaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtgctaggagtcctgaactttacattgtgaatt-gagcgaccaa 311  Q
    ||||||||||||||| || ||||| ||||||||||| || || |||||||||| | |||| | |||| |||||  ||  || ||||||| ||| | ||||    
T  15877633 aaagggtacaacttgtagaggttggccttgtactataaaaggtcaaccacatgttggtgccatgagt-ctgaaaatttgatagtgaattggagaggccaa 15877731  T
Q  312 gttccaactatagttagcagcactagagttctcactccatctc 354  Q
    |||| | |||  |||||||||  | ||||||||||||||||||    
T  15877732 gttctacctagggttagcagctttggagttctcactccatctc 15877774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 39440980 - 39440872
Alignment:
Q  54 gatcatcagtcgggttgtactattgtacgaactcatgg-accccttcttatcattgattaatgagtaagttctatgggctgacaccaattattagtagta 152  Q
    |||| ||||| || |||||| || |||||||| ||||| || |||||||||||||| ||||||  ||||||||||| | |||  ||||| ||| ||||||    
T  39440980 gatcgtcagttggattgtacaatagtacgaacccatgggacaccttcttatcattgcttaatggttaagttctatgtgttgatgccaatgattggtagta 39440881  T
Q  153 cgatgaata 161  Q
     || |||||    
T  39440880 tgaggaata 39440872  T

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Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 71 - 361
Target Start/End: Original strand, 4225064 - 4225362
Alignment:
Q  71 tactattgtacgaactcatggaccccttcttatcattgattaatgagtaagttctatgggctgacaccaattattagtagtacgatgaataga-gaatat 169  Q
    ||||||| || ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||   ||||| | ||||| | ||||||    
T  4225064 tactattataagaactcatgggacccttcttatctttgcttaatgagtaagttctatgggctgacaccaactattgacagtacaaggaataaatgaatat 4225163  T
Q  170 gtctgg-caatgataggataagacaac------tcataggaaaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaaccac 262  Q
    ||||   |  |||| |||||||||||       |||||| | ||||||| ||||||||||||||| ||||||||||||||||||||  | |||||||||     
T  4225164 gtcttaacgttgatgggataagacaaggacaagtcatagaagaaatgaccaaagggtacaacttgtagtggttgaccttgtactatataaggacaaccat 4225263  T
Q  263 atggtagtgctaggagtcctgaactttaca-ttgtgaattgagcgaccaagttccaactatagttagcagcactagagttctcactccatctcatcttct 361  Q
     ||||||||||||| ||||  ||||||||| |||||||||||||| ||||| ||||||||  ||||||| ||||||| |||||||| |||||||||||||    
T  4225264 gtggtagtgctaggggtccgaaactttacacttgtgaattgagcggccaag-tccaactagggttagcaacactagacttctcacttcatctcatcttct 4225362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 7355304 - 7355138
Alignment:
Q  28 aagacataggaagatgtagcataccagatcatcagtcgggttgtactattgtacgaactcatggaccccttcttatcattgattaatgagtaagttctat 127  Q
    |||| ||| ||||||||| |||| |||||||   ||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||    
T  7355304 aagatatatgaagatgtaacatatcagatcacgggtcgggttgtactattgtacgaactcatgggggccttcttatcattgcttaatgagtaagttctat 7355205  T
Q  128 gggctgacaccaattattagtagtacgatgaatagagaatatgtctggcaatgataggataagacaa 194  Q
    | | || ||||||  ||| | ||||| | ||||| ||||||||| ||||  |||||||||| |||||    
T  7355204 gagttggcaccaacgattggcagtacaaggaataaagaatatgtttggcgctgataggatatgacaa 7355138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 361
Target Start/End: Complemental strand, 12110271 - 12110099
Alignment:
Q  190 gacaactcataggaaaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtgcta-ggagtcctgaactt 288  Q
    ||||||||||| |  ||||||| ||||||||||||||| ||| |||| |||| |||||| || |||||||||||||||| | ||| || | ||  || ||    
T  12110271 gacaactcatatgggaaatgactaaagggtacaacttgtagttgttggccttctactataaaaggacaaccacatggtaatactaggggggccgaaattt 12110172  T
Q  289 tacattgtgaattgagcgaccaagttccaactatagttagcagcactagagttctcactccatctcatcttct 361  Q
    || ||||||||||||| |  ||||||||| |||  ||||||||||||| || ||||||||||| |||||||||    
T  12110171 tagattgtgaattgagtggacaagttccagctacggttagcagcactatagctctcactccatgtcatcttct 12110099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 376
Target Start/End: Complemental strand, 7355113 - 7355024
Alignment:
Q  287 tttacattgtgaattgagcgaccaagttccaactatagttagcagcactagagttctcactccatctcatcttctaaatatatgagcatg 376  Q
    ||||||| |||| |||||||||||||||||| |||  |||| |||||||||||||||||||  ||||||| ||||  ||| |||||||||    
T  7355113 tttacatcgtgagttgagcgaccaagttccagctagggttaacagcactagagttctcactttatctcattttctccatagatgagcatg 7355024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 10179278 - 10179341
Alignment:
Q  324 gttagcagcactagagttctcactccatctcatcttctaaatatatgagcatgtctgctagttc 387  Q
    ||||| ||||||||||||||||||||||||||||||||  ||| |||||||||  |||||||||    
T  10179278 gttaggagcactagagttctcactccatctcatcttctccatagatgagcatgagtgctagttc 10179341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 387
Target Start/End: Original strand, 30500389 - 30500480
Alignment:
Q  297 gaattgagcgaccaagttccaactatagttagcagca-ctagagttctcactccatctcatcttctaaatatatgagcatgtctgctagttc 387  Q
    |||||||||| |||||||||| |||  ||||||| |  |||||||||||||||||||||||||||   ||| |||||||||  |||||||||    
T  30500389 gaattgagcggccaagttccagctagggttagcaaccgctagagttctcactccatctcatcttcctcatagatgagcatgagtgctagttc 30500480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 376
Target Start/End: Original strand, 50688340 - 50688524
Alignment:
Q  190 gacaactcataggaaaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtgctaggagtcctgaacttt 289  Q
    |||||||||||| | ||||||| |||||    |||||| | |||||  ||| ||||||| || ||| || ||||||||||||  ||| ||||  || |||    
T  50688340 gacaactcatagcataaatgaccaaaggacctaacttgtactggttagcctcgtactataaaaggataatcacatggtagtgtaaggggtccgaaaattt 50688439  T
Q  290 acattgtgaattgagcgaccaagttccaactatagttagcagcactagagttctcactccatctcatcttctaaatatatgagcatg 376  Q
    |||||||||||| || | |||||||   | ||  |||| ||||| |||||||||||||||||||||||||||  ||| |||||||||    
T  50688440 acattgtgaatttagtggccaagtttaga-tagggttaacagca-tagagttctcactccatctcatcttctccatagatgagcatg 50688524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 12110386 - 12110327
Alignment:
Q  82 gaactcatggaccccttcttatcattgattaatgagtaagttctatgggctgacaccaat 141  Q
    ||||||||||  ||||||||||||||| |||| ||||||||| | ||||||| |||||||    
T  12110386 gaactcatggggcccttcttatcattgcttaacgagtaagttttgtgggctggcaccaat 12110327  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 5066633 - 5066677
Alignment:
Q  204 aaaatgacaaaagggtacaacttgaagtggttgaccttgtactat 248  Q
    |||||||| ||||||||||||||| ||||| || |||||||||||    
T  5066633 aaaatgaccaaagggtacaacttgtagtgggtggccttgtactat 5066677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 361
Target Start/End: Original strand, 14274390 - 14274727
Alignment:
Q  27 aaagacataggaagatgtagcataccagatcatcagtcgggttgtactattgtacgaactcatggaccccttcttatcattgattaatgagtaagttcta 126  Q
    ||||| ||| ||||||||||||||||| ||   |||  |||||||||||||| | |||||||| || |||||||| |||||| |||||||||||||| ||    
T  14274390 aaagagataagaagatgtagcataccatatttccagctgggttgtactattggatgaactcattgagcccttcttgtcattgcttaatgagtaagtttta 14274489  T
Q  127 tgggctgacaccaattattagtagtacgatgaatagagaa-tatgtctggcaatgatagga-taagacaactcataggaaaaatgacaaaagggtacaac 224  Q
    |||| || || |||| ||| | ||||| | ||||  || | |||||||  |  || ||||| || ||||| |||||||| ||||||| |||||||||||     
T  14274490 tgggttggcatcaatgattggcagtacaaggaatcaagtactatgtcttacgctggtaggaataggacaagtcataggacaaatgactaaagggtacaaa 14274589  T
Q  225 ttgaagtggttgaccttgtactattaagggacaaccacatggtagtgctaggagtcctgaactttaca-ttgtgaattgagcgaccaagttccaactata 323  Q
    ||| |||||||||||||||| ||| || |||||||||| ||||||  ||||| ||||  || || ||| ||||||||| |||| ||||| || | |||      
T  14274590 ttgtagtggttgaccttgtattataaaaggacaaccacgtggtagcactaggggtccgaaatttgacatttgtgaattaagcggccaag-tcaagctagg 14274688  T
Q  324 gtt-agcagcactagagttctcactccatctcatcttct 361  Q
    ||| || ||||||||||||||||||||||||||| ||||    
T  14274689 gttaagaagcactagagttctcactccatctcattttct 14274727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 376
Target Start/End: Original strand, 16803395 - 16803549
Alignment:
Q  221 caacttgaagtggttgaccttgtactattaagggacaaccacatggtagtgctaggagtcctgaactttacattgtgaattgagcgaccaagttccaact 320  Q
    |||||||||||| ||| ||||||||||| || ||||||||||||| |||||| | | |||| ||| |||  ||||||| ||||| | |||||||||||||    
T  16803395 caacttgaagtgattgtccttgtactatgaaaggacaaccacatgttagtgccaagggtcc-gaaattttgattgtgatttgagaggccaagttccaact 16803493  T
Q  321 atagttagcagcactagagttctcactccatctcatcttctaaatatatgagcatg 376  Q
    |  |||||||||  ||||||||||||| |||||||||||||  ||| |||||||||    
T  16803494 agggttagcagctttagagttctcactacatctcatcttctccatagatgagcatg 16803549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 261
Target Start/End: Complemental strand, 2477066 - 2476868
Alignment:
Q  70 gtactattgtacgaactcatggaccccttcttatcattgattaatgagtaagttctatgggctgacaccaattattagtagtacgatgaat-agagaata 168  Q
    |||| |||||| ||||||||||| |||||||||||| || ||| ||||||||||||||||| |||||||||| ||| ||||||| | |||| | ||||||    
T  2477066 gtacaattgtatgaactcatggagcccttcttatcagtgcttagtgagtaagttctatgggatgacaccaatgattggtagtacaaggaataaaagaata 2476967  T
Q  169 tgtctggc---aatg--ataggataa-gacaactcataggaaaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaacca 261  Q
    |||||| |    |||  ||| ||||| || | ||||| |  |||||||  ||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  2476966 tgtctgacgctcatgatataagataaggatagctcatggataaaatgatcaaagggtacaacttgtagtggttgaccttgtactattaaagaacaacca 2476868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 26573187 - 26573086
Alignment:
Q  28 aagacataggaagatgtagcataccagatcatcagtcgggttgtactattgtacgaactcatggaccccttcttatcattgattaatgagtaagttctat 127  Q
    |||| |||| || |||||||||||||||||| |||||| || ||||||||||||||||||||||  ||||| ||||||||| |||||||||||||| |||    
T  26573187 aagatatagaaaaatgtagcataccagatcaacagtcgagtcgtactattgtacgaactcatggtacccttattatcattgtttaatgagtaagttatat 26573088  T
Q  128 gg 129  Q
    ||    
T  26573087 gg 26573086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 376
Target Start/End: Complemental strand, 29542426 - 29542255
Alignment:
Q  205 aaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtgctaggagtcctgaactttacattgtgaattgag 304  Q
    ||||||| ||||||||||||||  ||| || | ||||||| ||| || || |||||||||| |||||| |   || |  || ||||||| ||||||| |     
T  29542426 aaatgaccaaagggtacaacttatagtcgtaggccttgtaatataaaagggcaaccacatgttagtgccaaaggttcgaaattttacatggtgaatttaa 29542327  T
Q  305 cgaccaagttccaactatagttagcagcactagagttctcactccatctcatcttctaaatatatgagcatg 376  Q
     | |||||||||| ||| ||||||  ||||||||||||||||| |||||||||||||  |||||||||||||    
T  29542326 aggccaagttccagctagagttagttgcactagagttctcacttcatctcatcttctccatatatgagcatg 29542255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 375
Target Start/End: Original strand, 984101 - 984254
Alignment:
Q  223 acttgaagtggttgaccttgtactattaagggacaaccacatggtagtgctaggagtcctgaactttaca-ttgtgaattgagcgaccaagttccaacta 321  Q
    ||||| ||||||||||||| |||||| || ||||||||| |||||||||||||| ||||  || |||| | ||||||||| ||||  |||| |||| |||    
T  984101 acttgtagtggttgaccttctactataaaaggacaaccatatggtagtgctaggggtccaaaattttagacttgtgaattaagcgggcaag-tccagcta 984199  T
Q  322 tagtt-agcagcactagagttctcactccatctcatcttctaaatatatgagcat 375  Q
      ||| || ||||| |||||||||| |||||||||| ||||| ||| ||||||||    
T  984200 aggttaagtagcaccagagttctcaatccatctcatattctacatagatgagcat 984254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 376
Target Start/End: Complemental strand, 26572995 - 26572832
Alignment:
Q  213 aaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtg-ctaggagtcctgaactttaca-ttgtgaattgagcgacca 310  Q
    ||||||||||||||| ||||| |  ||||||||||| || ||| || |||||| ||||| | | | |||||||| |||||| |||||||||||| | |||    
T  26572995 aaagggtacaacttgtagtggctagccttgtactataaaaggaaaatcacatgttagtgccaatgggtcctgaattttacacttgtgaattgagaggcca 26572896  T
Q  311 agttccaactatagttagcagcactagagttctcactccatctcatcttctaaatatatgagcatg 376  Q
    | ||| | |||  |||||||| ||||||||||| |||  ||||||||||||  ||| |||||||||    
T  26572895 a-ttctagctagggttagcagtactagagttctgact-tatctcatcttctccatagatgagcatg 26572832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 12865972 - 12865904
Alignment:
Q  204 aaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtgc 272  Q
    |||||||| ||||||| ||||||| ||||||  ||| |||||||| || ||||||||||||| ||||||    
T  12865972 aaaatgaccaaagggtgcaacttgtagtggtccaccatgtactataaaaggacaaccacatgttagtgc 12865904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 2476855 - 2476792
Alignment:
Q  324 gttagcagcactagagttctcactccatctcatcttctaaatatatgagcatgtctgctagttc 387  Q
    |||||||| |||||||||||||||  ||||||||||||  ||| |||||||||  |||||||||    
T  2476855 gttagcagtactagagttctcacttaatctcatcttcttcatagatgagcatgagtgctagttc 2476792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 1781081 - 1781025
Alignment:
Q  216 gggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtgc 272  Q
    |||||||||||| |||||||||| ||||||||| ||  || ||||||||| ||||||    
T  1781081 gggtacaacttgtagtggttgacattgtactataaaccgataaccacatgttagtgc 1781025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 387
Target Start/End: Complemental strand, 17558553 - 17558454
Alignment:
Q  289 tacattgtgaattgagcgaccaagttccaactatagttagcagc-actagagttctcactccatctcatcttctaaatatatgagcatgtctgctagttc 387  Q
    |||||||||||||||||| |||||||| | |||  ||||||||| | ||||||||||||||  |||||||||||  ||| |||||||||  |||||||||    
T  17558553 tacattgtgaattgagcggccaagttctagctagggttagcagctattagagttctcactctgtctcatcttctccatagatgagcatgagtgctagttc 17558454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 25895560 - 25895489
Alignment:
Q  190 gacaactcataggaaaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaaccac 262  Q
    |||| |||||||||||| |||| ||||||||||||||  |||||||||||||||| ||| || ||||||||||    
T  25895560 gacatctcataggaaaa-tgaccaaagggtacaacttttagtggttgaccttgtaatataaaaggacaaccac 25895489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 5369804 - 5369858
Alignment:
Q  205 aaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaac 259  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||| || |||||||    
T  5369804 aaatgaccaaagggtacaacttgtagtggttggccttgtactataaaaggacaac 5369858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 30969605 - 30969659
Alignment:
Q  204 aaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaa 258  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||| || ||||||    
T  30969605 aaaatgaccaaagggtacaacttgtagtgggtgaccttgtactataaaaggacaa 30969659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 33856186 - 33856129
Alignment:
Q  204 aaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaacca 261  Q
    |||||||| ||||||||||||||| ||||||||  |||||||||| || ||| |||||    
T  33856186 aaaatgactaaagggtacaacttggagtggttggtcttgtactataaaaggaaaacca 33856129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 25895427 - 25895375
Alignment:
Q  324 gttagcagcactagagttctcactccatctcatcttctaaatatatgagcatg 376  Q
    |||||||||  || ||||||||||||||||||||||||  ||| |||||||||    
T  25895427 gttagcagctttatagttctcactccatctcatcttctccatagatgagcatg 25895375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 376
Target Start/End: Original strand, 862310 - 862469
Alignment:
Q  217 ggtacaacttgaagtggttgaccttgtactattaagggacaaccacatggtagtgctaggagtcctgaactttaca-ttgtgaattgagcgaccaagttc 315  Q
    ||||||||||| ||||||||||||||||| |  || |||||||||||   |||||| |   ||||  || |||||| |||||||||||| |   |||| |    
T  862310 ggtacaacttgtagtggttgaccttgtaccacaaaaggacaaccacacattagtgccaaaggtccgaaattttacacttgtgaattgagtggggaagt-c 862408  T
Q  316 caactatagttagcagcactagagttctcactccatctcatcttctaaatatatgagcatg 376  Q
    || |||  ||||||| |||||||||| |||||||||||||||||||  ||| |||||||||    
T  862409 cagctagggttagcatcactagagttttcactccatctcatcttcttcatagatgagcatg 862469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 17468643 - 17468768
Alignment:
Q  70 gtactattgtacgaactcatggaccccttcttatcattgattaatgagtaagttctatgggctgacaccaattattagtagtacgatgaataga-gaata 168  Q
    |||||||||||| |||| ||||   |||||||| ||||| |||||||| |||||||| | | || ||||||| ||||| ||||| | ||||| | || ||    
T  17468643 gtactattgtacaaactgatgggagccttcttaccattgcttaatgagcaagttctacgagttggcaccaatgattagcagtacaaggaataaaggacta 17468742  T
Q  169 tgtctggcaatgataggataagacaa 194  Q
    |||||| | ||||| |||||||||||    
T  17468743 tgtctgacgatgatgggataagacaa 17468768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 20625849 - 20625894
Alignment:
Q  213 aaagggtacaacttgaagtggttgaccttgtactattaagggacaa 258  Q
    ||||||||||||||| |||||||||||||||||||| || ||||||    
T  20625849 aaagggtacaacttgtagtggttgaccttgtactataaaaggacaa 20625894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 23361383 - 23361462
Alignment:
Q  297 gaattgagcgaccaagttccaactatagttagcagcactagagttctcactccatctcatcttctaaatatatgagcatg 376  Q
    |||||||| | |||||||||| ||||  |||  || |||||||||||||||||||||||| ||||  ||| |||||||||    
T  23361383 gaattgagaggccaagttccagctatcattattagtactagagttctcactccatctcattttctccatagatgagcatg 23361462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 27893198 - 27893269
Alignment:
Q  190 gacaactcataggaaaaatgacaaaagggtacaacttgaagtggttgaccttgtactattaagggacaacca 261  Q
    ||||||||||  | |||||||| ||||||||||| ||| |||||||| ||||||| ||| || |||||||||    
T  27893198 gacaactcatgtgtaaaatgaccaaagggtacaaattgcagtggttggccttgtattataaaaggacaacca 27893269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 25233519 - 25233566
Alignment:
Q  214 aagggtacaacttgaagtggttgaccttgtactattaagggacaacca 261  Q
    |||||||||||||| |||||||| ||||||||||| || |||||||||    
T  25233519 aagggtacaacttgtagtggttggccttgtactataaaaggacaacca 25233566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 30122637 - 30122587
Alignment:
Q  214 aagggtacaacttgaagtggttgaccttgtactattaagggacaaccacat 264  Q
    |||||||||||||| |||||||| ||||||||||| || ||| ||||||||    
T  30122637 aagggtacaacttgtagtggttggccttgtactataaaaggaaaaccacat 30122587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 7635042 - 7635094
Alignment:
Q  213 aaagggtacaacttgaagtggttgaccttgtactattaagggacaaccacatg 265  Q
    |||| |||||||||| ||||| || ||||||||||| || |||||||||||||    
T  7635042 aaagagtacaacttgcagtggctggccttgtactataaaaggacaaccacatg 7635094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 107954 - 108008
Alignment:
Q  190 gacaactcataggaaaaatgacaaaagggtacaacttgaagtggttgaccttgta 244  Q
    ||||||||||||| |||||||| |||   ||||||||| ||||||||||||||||    
T  107954 gacaactcataggtaaaatgaccaaatcatacaacttgcagtggttgaccttgta 108008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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