View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1963_low_12 (Length: 232)

Name: NF1963_low_12
Description: NF1963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1963_low_12
NF1963_low_12
[»] chr4 (8 HSPs)
chr4 (19-203)||(4838170-4838354)
chr4 (22-197)||(5294782-5294957)
chr4 (22-197)||(21853936-21854111)
chr4 (22-197)||(21909799-21909974)
chr4 (22-197)||(27682443-27682618)
chr4 (26-197)||(17829925-17830096)
chr4 (30-143)||(17159848-17159961)
chr4 (26-169)||(3489277-3489420)
[»] scaffold0058 (2 HSPs)
scaffold0058 (19-199)||(25147-25327)
scaffold0058 (47-172)||(55943-56068)
[»] scaffold0014 (4 HSPs)
scaffold0014 (19-191)||(154861-155033)
scaffold0014 (19-199)||(152817-152997)
scaffold0014 (22-197)||(235757-235932)
scaffold0014 (26-197)||(238740-238910)
[»] scaffold1411 (1 HSPs)
scaffold1411 (22-197)||(988-1163)
[»] chr3 (5 HSPs)
chr3 (22-197)||(13114202-13114377)
chr3 (22-197)||(4379296-4379471)
chr3 (28-92)||(6431404-6431468)
chr3 (28-82)||(8981972-8982026)
chr3 (28-82)||(9545977-9546031)
[»] chr2 (4 HSPs)
chr2 (46-197)||(24941994-24942145)
chr2 (22-197)||(4466057-4466232)
chr2 (22-197)||(5338726-5338901)
chr2 (28-89)||(45023452-45023513)
[»] scaffold0335 (1 HSPs)
scaffold0335 (19-197)||(14631-14806)
[»] chr8 (3 HSPs)
chr8 (43-197)||(14883021-14883175)
chr8 (26-197)||(31992796-31992966)
chr8 (28-82)||(21989352-21989406)
[»] scaffold0553 (1 HSPs)
scaffold0553 (46-197)||(2191-2342)
[»] scaffold0031 (2 HSPs)
scaffold0031 (22-197)||(113141-113316)
scaffold0031 (22-197)||(103886-104061)
[»] chr5 (6 HSPs)
chr5 (26-197)||(30945411-30945582)
chr5 (43-197)||(21761176-21761330)
chr5 (30-95)||(19383215-19383280)
chr5 (129-197)||(18211346-18211414)
chr5 (28-82)||(18388726-18388780)
chr5 (28-82)||(33948136-33948190)
[»] chr1 (1 HSPs)
chr1 (43-197)||(20310893-20311047)
[»] chr7 (8 HSPs)
chr7 (28-92)||(9536598-9536662)
chr7 (30-92)||(2993250-2993312)
chr7 (28-82)||(5383345-5383399)
chr7 (28-82)||(8509845-8509899)
chr7 (28-82)||(26349729-26349783)
chr7 (28-82)||(32107488-32107542)
chr7 (28-82)||(44906175-44906229)
chr7 (28-82)||(46506166-46506220)
[»] chr6 (3 HSPs)
chr6 (28-92)||(24923334-24923398)
chr6 (28-82)||(18168206-18168260)
chr6 (28-82)||(31365851-31365905)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 4838170 - 4838354
Alignment:
Q  19 ctagcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaat 118  Q
    |||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||    
T  4838170 ctagcagccatcttctcagctcttgaaggcttagcagatgcagcagcaccaaaagcttcaactttttctttgttggctatgacaaaggtgttcaaagaat 4838269  T
Q  119 caaacatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttactggttca 203  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4838270 caaacatagcagacatgtttgaaagattcttagtcgttttggtttgaggtggtggtggtgtagatgaaggaatgttactggttca 4838354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 5294782 - 5294957
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | |||||||| |||||||||||| ||||| || | |||||||||  |||||| ||| || |||| ||||| ||| | ||||    
T  5294782 gcaaccattttctcagccttagaaggcttggcaggtgcagcatcaccagaaacatcagcttttcttttgtttgctgtgacaaaagtgtttaaagagtcaa 5294881  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||  | |||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  5294882 acaaggaagacatgtttgggagattctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 5294957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 21854111 - 21853936
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | |||||||| |||||||||||| ||||| || | |||||||||  |||||| ||| || |||| ||||| ||| | ||||    
T  21854111 gcaaccattttctcagccttagaaggcttggcaggtgcagcatcaccagaaacatcagcttttcttttgtttgctgtgacaaaagtgtttaaagagtcaa 21854012  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||  | |||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  21854011 acaaggaagacatgtttgggagattctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 21853936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 21909974 - 21909799
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | |||||||| |||||||||||| ||||| || | |||||||||  |||||| ||| || |||| ||||| ||| | ||||    
T  21909974 gcaaccattttctcagccttagaaggcttggcaggtgcagcatcaccagaaacatcagcttttcttttgtttgctgtgacaaaagtgtttaaagagtcaa 21909875  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||  | |||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  21909874 acaaggaagacatgtttgggagattctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 21909799  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 27682443 - 27682618
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | |||||||| |||||||||||| ||||| || | |||||||||  |||||| ||| || |||| ||||| ||| | ||||    
T  27682443 gcaaccattttctcagccttagaaggcttggcaggtgcagcatcaccagaaacatcagcttttcttttgtttgctgtgacaaaagtgtttaaagagtcaa 27682542  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||  | |||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  27682543 acaaggaagacatgtttgggagattctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 27682618  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 17829925 - 17830096
Alignment:
Q  26 ccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacat 125  Q
    |||| ||||||||  | |||||||| |||||||||| |  |||| || | ||||||||| ||||||| ||| || |||| ||||| ||| |||||||||     
T  17829925 ccattttctcagccttagaaggcttggcaggtgcagtattaccagaaacatcagcttttcctttgtttgctgtgacaaaagtgtttaaagaatcaaacaa 17830024  T
Q  126 agcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
     | |||||| ||||| ||||||| ||| |||||| |||||||||| ||||||||  ||||||||||| ||||    
T  17830025 ggaagacatatttgggagattctgagttgttttgatttgaggtggaggtggtgtgaatgaaggaatggtact 17830096  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 17159961 - 17159848
Alignment:
Q  30 cttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacatagca 129  Q
    |||||||||||||||||| |||||||||| |||| ||||| |||||||||| || |||||||| ||  |  |||||||||| |   ||||||||| ||||    
T  17159961 cttctcagctcttgaaggtttagcaggtggagcagcaccagaagcttcagccttctctttgtttgcagtcacaaaggtgttgagggaatcaaacaaagca 17159862  T
Q  130 gacatgtttggaag 143  Q
    ||||| ||||||||    
T  17159861 gacatatttggaag 17159848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 3489277 - 3489420
Alignment:
Q  26 ccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacat 125  Q
    |||| ||||||||  | |||||||| ||||| ||| || ||||| || | ||||| ||| ||||||| ||| || |||| ||||| ||| | |||||||     
T  3489277 ccattttctcagccttagaaggcttggcaggagcaacatcaccagaaacatcagcatttcctttgtttgctgtgacaaaagtgtttaaagagtcaaacaa 3489376  T
Q  126 agcagacatgtttggaagattcttagtggttttggtttgaggtg 169  Q
     |||||||| ||||| ||||||| ||| ||||||||||| ||||    
T  3489377 ggcagacatatttggcagattctgagttgttttggtttgtggtg 3489420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 25147 - 25327
Alignment:
Q  19 ctagcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaat 118  Q
    |||||| |||| ||||||||  | || ||||||||||||||| || ||||| |||| |||||||||||||| || ||| || |||| ||||| ||| |||    
T  25147 ctagcagccattttctcagccttagagggcttagcaggtgcaacatcaccagaagcatcagctttttctttttttgctgtgacaaaagtgtttaaagaat 25246  T
Q  119 caaacatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttactgg 199  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25247 caaacataacagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatggtactgg 25327  T

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Target: scaffold0058; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 55943 - 56068
Alignment:
Q  47 gcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacatagcagacatgtttggaagatt 146  Q
    ||||||||||||||||| ||||| || | |||  |||||||||||| | | || |||| ||||| ||| | |||||||  |||||| | |||| ||||||    
T  55943 gcttagcaggtgcagcatcaccagaaacatcaattttttctttgtttgatgtgacaaacgtgtttaaagagtcaaacaaggcagacgtatttgtaagatt 56042  T
Q  147 cttagtggttttggtttgaggtggtg 172  Q
    || ||| ||||||||||| |||||||    
T  56043 ctgagttgttttggtttgtggtggtg 56068  T

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Target: scaffold0014 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 154861 - 155033
Alignment:
Q  19 ctagcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaat 118  Q
    ||||||||||| ||||||||| | || |||||||||||||||||| || |  ||||||||||||| || |||||||||  | |||| ||||||||  | |    
T  154861 ctagcaaccattttctcagctttagagggcttagcaggtgcagcagcatccgaagcttcagctttctccttgttggctgagacaaaagtgttcaaggagt 154960  T
Q  119 caaacatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaat 191  Q
    ||||||  | ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||    
T  154961 caaacagggaagacatgtttggaagtttctgagtggttttggtttgaggtggtggtggtgtagatgagggaat 155033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 152997 - 152817
Alignment:
Q  19 ctagcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaat 118  Q
    |||||| |||| ||||||||| | || |||||||||||||||| | ||||| ||||||||||||| || |||||||||  | |||| ||||||||  | |    
T  152997 ctagcagccattttctcagctttagagggcttagcaggtgcagtatcaccagaagcttcagctttctccttgttggctgagacaaaagtgttcaaggagt 152898  T
Q  119 caaacatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttactgg 199  Q
    ||||||  ||||||||||| ||||  |||| |||||||||| |    ||||||||||||||||||||||||||| ||||||    
T  152897 caaacagggcagacatgttaggaattttctgagtggttttgatcattggtggtggtggtgtagatgaaggaatggtactgg 152817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 235757 - 235932
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | |||||||| |||||||||||| ||||| || | |||||||||  |||||| ||| || |||| ||||| ||| | ||||    
T  235757 gcaaccattttctcagccttagaaggcttggcaggtgcagcatcaccagaaacatcagcttttcttttgtttgctgtgacaaaagtgtttaaagagtcaa 235856  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||  | |||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  235857 acaaggaagacatgtttgggagattctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 235932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 238740 - 238910
Alignment:
Q  26 ccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacat 125  Q
    |||| ||||||||  | |||||||| ||||||||| || |||||||| | ||| ||||| ||||||| ||| || |||| ||||| ||| | |||||||     
T  238740 ccattttctcagccttagaaggcttggcaggtgcaacatcaccaaaaacatcaacttttcctttgtttgctgtgacaaaagtgtttaaagagtcaaacaa 238839  T
Q  126 agcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
     |||||||| ||||||| ||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  238840 ggcagacatatttggaa-attctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 238910  T

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Target: scaffold1411 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1411
Description:

Target: scaffold1411; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 988 - 1163
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | || |||||||||||||||||| ||||| ||||  || ||||||||||||| ||| || |||| ||||| ||| | ||||    
T  988 gcaaccattttctcagccttagagggcttagcaggtgcagcatcaccagaagcaacaactttttctttgtttgctgtgacaaaagtgtttaaagagtcaa 1087  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    ||| ||||||||| ||||| ||||||| ||| |||||| |||| ||||| |||||||| |||||||||||| ||||    
T  1088 acaaagcagacatatttgggagattctgagttgttttgatttgtggtggaggtggtgtggatgaaggaatggtact 1163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 13114202 - 13114377
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | || |||||||||||||||||| ||||| ||||  || ||||||||||||| ||| || |||| ||||| ||| | ||||    
T  13114202 gcaaccattttctcagccttagagggcttagcaggtgcagcatcaccagaagcaacaactttttctttgtttgctgtgacaaaagtgtttaaagagtcaa 13114301  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    ||| ||||||||| ||||| ||||||| ||| |||||| |||| ||||| |||||||| |||||||||||| ||||    
T  13114302 acaaagcagacatatttgggagattctgagttgttttgatttgtggtggaggtggtgtggatgaaggaatggtact 13114377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 4379471 - 4379296
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | |||||||| |||||||||||| ||||| || | |||||||||  |||||| ||| || |||| ||||| ||| | ||||    
T  4379471 gcaaccattttctcagccttagaaggcttggcaggtgcagcatcaccagaaacatcagcttttcttttgtttgctgtgacaaaagtgtttaaagagtcaa 4379372  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||  | |||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  4379371 acaaggaagacatgtttgggagattctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 4379296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 6431468 - 6431404
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgtt 92  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||  ||||||||    
T  6431468 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagcttgctctttgtt 6431404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 8982026 - 8981972
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  8982026 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 8981972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 9546031 - 9545977
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  9546031 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 9545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 24942145 - 24941994
Alignment:
Q  46 ggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacatagcagacatgtttggaagat 145  Q
    |||||||||||||||||| ||||| |||| ||| ||||||||||||| ||| || |||| ||||| ||| || ||||||  |||||||| ||||| ||||    
T  24942145 ggcttagcaggtgcagcatcaccagaagcatcaactttttctttgtttgctgtgacaaaagtgtttaaagaaccaaacaatgcagacatatttgggagat 24942046  T
Q  146 tcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    ||| ||| ||||||||||| ||||| |||||||| |||||||||||| ||||    
T  24942045 tctgagttgttttggtttgtggtggaggtggtgtggatgaaggaatggtact 24941994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 4466232 - 4466057
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | |||||||| |||||||||||| ||||| || | |||||||||  |||||| ||| || |||| ||||| ||| | ||||    
T  4466232 gcaaccattttctcagccttagaaggcttggcaggtgcagcatcaccagaaacatcagcttttcttttgtttgctgtgacaaaagtgtttaaagagtcaa 4466133  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||  | |||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  4466132 acaaggaagacatgtttgggagattctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 4466057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 5338726 - 5338901
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | |||||||| |||||||||||| ||||| || | |||||||||  |||||| ||| || |||| ||||| ||| | ||||    
T  5338726 gcaaccattttctcagccttagaaggcttggcaggtgcagcatcaccagaaacatcagcttttcttttgtttgctgtgacaaaagtgtttaaagagtcaa 5338825  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||  | |||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  5338826 acaaggaagacatgtttgggagattctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 5338901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 45023513 - 45023452
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttcttt 89  Q
    |||||||| ||||||||||||||||||||| |||||  | || | ||||||||||| |||||    
T  45023513 atcttctctgctcttgaaggcttagcaggttcagcaggatcagaggcttcagctttctcttt 45023452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 14631 - 14806
Alignment:
Q  19 ctagcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaat 118  Q
    |||||| |||| ||||||||  | || |||||||||||||||||| ||||| |||| ||||||||||||||||| |||||| |||| ||||| ||| | |    
T  14631 ctagcagccattttctcagccttagagggcttagcaggtgcagcatcaccagaagcatcagctttttctttgtttgctatgacaaaagtgtttaaagagt 14730  T
Q  119 caaacatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||||| ||||||||||||| | ||||||  ||| ||||||||||   ||| ||| ||||| |||||||||||| ||||    
T  14731 caaacaaagcagacatgttttggagattccgagttgttttggttt---gtgatggaggtgtggatgaaggaatggtact 14806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 197
Target Start/End: Original strand, 14883021 - 14883175
Alignment:
Q  43 gaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacatagcagacatgtttggaa 142  Q
    |||||||| |||||||||||| ||||| || | ||||||||| ||||||| ||| || |||| ||||| ||| |||||||||  | |||||| ||||| |    
T  14883021 gaaggcttggcaggtgcagcatcaccagaatcatcagcttttcctttgtttgctgtgacaaaagtgtttaaagaatcaaacaaggaagacatatttggga 14883120  T
Q  143 gattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||||| ||| ||||||||||||||||| ||||||||  ||||||||||| ||||    
T  14883121 gattctgagttgttttggtttgaggtggaggtggtgtgaatgaaggaatggtact 14883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 31992796 - 31992966
Alignment:
Q  26 ccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacat 125  Q
    |||| ||||||||  | |||||||| ||||||||| || |||||||| | ||| ||||| ||||||| ||| || |||| ||||| ||| | |||||||     
T  31992796 ccattttctcagccttagaaggcttggcaggtgcaacatcaccaaaaacatcaacttttcctttgtttgctgtgacaaaagtgtttaaagagtcaaacaa 31992895  T
Q  126 agcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
     |||||||| ||||||| ||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  31992896 ggcagacatatttggaa-attctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 31992966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 21989352 - 21989406
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  21989352 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 21989406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 2191 - 2342
Alignment:
Q  46 ggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacatagcagacatgtttggaagat 145  Q
    ||||| ||||||||| || ||||| || | ||||||||||||||||| ||| || |||| ||||| ||| | |||||||  |||||||| ||||||||||    
T  2191 ggcttggcaggtgcaacatcaccagaaacatcagctttttctttgtttgctgtgacaaaagtgtttaaagagtcaaacaaggcagacatatttggaagat 2290  T
Q  146 tcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    ||| ||| ||||||||||| ||||| ||| |||| |||||||||||| ||||    
T  2291 tctgagttgttttggtttgtggtggaggtagtgtggatgaaggaatggtact 2342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 113141 - 113316
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | |||||||| |||||||||||| ||||| || | |||||||||  |||||| ||| || |||| ||||| ||| | ||||    
T  113141 gcaaccattttctcagccttagaaggcttggcaggtgcagcatcaccagaaacatcagcttttcttttgtttgctgtgacaaaagtgtttaaagagtcaa 113240  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||  | |||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  113241 acaaggaagacatgtttgggagattctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 113316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 103886 - 104061
Alignment:
Q  22 gcaaccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaa 121  Q
    |||||||| ||||||||  | |||||||| ||||||||| || ||||| ||   |||| |||| ||||||| ||| || |||| ||||| ||| | ||||    
T  103886 gcaaccattttctcagccttagaaggcttggcaggtgcaacatcaccagaaatatcagtttttcctttgtttgctgtgacaaaagtgtttaaagagtcaa 103985  T
Q  122 acatagcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||  |||||||| || || ||||||| ||| ||||||| ||| ||||| ||||||||  ||||||||||| ||||    
T  103986 acaaggcagacatattcgggagattctgagttgttttgggttgtggtggaggtggtgtgaatgaaggaatggtact 104061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 30945411 - 30945582
Alignment:
Q  26 ccatcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacat 125  Q
    |||| ||||||||  | |||||||| |||||||||| |  |||| || | ||||||||| ||||||| ||| || |||| ||||| ||| |||||||||     
T  30945411 ccattttctcagccttagaaggcttggcaggtgcagtattaccagaaacatcagcttttcctttgtttgctgtgacaaaagtgtttaaagaatcaaacaa 30945510  T
Q  126 agcagacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
     | |||||| ||||| ||||||| ||| |||||| |||||||||| ||||||||  ||||||||||| ||||    
T  30945511 ggaagacatatttgggagattctgagttgttttgatttgaggtggaggtggtgtgaatgaaggaatggtact 30945582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 21761330 - 21761176
Alignment:
Q  43 gaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacatagcagacatgtttggaa 142  Q
    |||||||| |||||||||||| ||||| || | |||||||||  |||||| ||| || |||| ||||| ||| | ||||| |  |  ||||||||||| |    
T  21761330 gaaggcttggcaggtgcagcatcaccagaaacatcagcttttcttttgtttgctgtgacaaaagtgtttaaagagtcaaataaggaggacatgtttggga 21761231  T
Q  143 gattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||||| ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  21761230 gattctgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 21761176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 19383215 - 19383280
Alignment:
Q  30 cttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggc 95  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||||||||| || |||||||||||    
T  19383215 cttctcagctcttgaaggcatagcaggtgcagcatcaccagaagcttcagccttctctttgttggc 19383280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 18211346 - 18211414
Alignment:
Q  129 agacatgtttggaagattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||  ||||||| ||| ||||    
T  18211346 agacatgtttgggagattctgagtcgttttggtttgtggtggaggtggtgtgaatgaagggatggtact 18211414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 18388780 - 18388726
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  18388780 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 18388726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 33948190 - 33948136
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  33948190 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 33948136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 20311047 - 20310893
Alignment:
Q  43 gaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgttggctatggcaaaggtgttcaaaaaatcaaacatagcagacatgtttggaa 142  Q
    ||||| || ||||||||| || ||||| || | ||| ||||| ||||||| ||| || |||| ||||| ||| | |||||||  | |||||||||||| |    
T  20311047 gaaggtttggcaggtgcaacatcaccagaaacatcaacttttcctttgtttgctgtgacaaaagtgtttaaagagtcaaacaaggaagacatgtttggga 20310948  T
Q  143 gattcttagtggttttggtttgaggtggtggtggtgtagatgaaggaatgttact 197  Q
    |||| | ||| ||||||||||| ||||| ||||||||  ||||||||||| ||||    
T  20310947 gattttgagttgttttggtttgtggtggaggtggtgtgaatgaaggaatggtact 20310893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 9536598 - 9536662
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgtt 92  Q
    |||||||| ||||||||||||||||||||| ||| |  |||| | ||||||||||| ||||||||    
T  9536598 atcttctctgctcttgaaggcttagcaggttcagtaggaccagaggcttcagctttctctttgtt 9536662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 2993250 - 2993312
Alignment:
Q  30 cttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgtt 92  Q
    ||||| ||| |||||||| ||| |||||| |||| |||||||||||||| |||| ||||||||    
T  2993250 cttctgagcccttgaaggtttaacaggtggagcagcaccaaaagcttcatctttctctttgtt 2993312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 5383345 - 5383399
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  5383345 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 5383399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 8509899 - 8509845
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  8509899 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 8509845  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 26349729 - 26349783
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  26349729 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 26349783  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 32107542 - 32107488
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  32107542 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 32107488  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 44906229 - 44906175
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  44906229 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 44906175  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 46506220 - 46506166
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  46506220 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 46506166  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 24923334 - 24923398
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctttttctttgtt 92  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||  ||||||||    
T  24923334 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagcttgctctttgtt 24923398  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 18168260 - 18168206
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  18168260 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 18168206  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 31365905 - 31365851
Alignment:
Q  28 atcttctcagctcttgaaggcttagcaggtgcagcaacaccaaaagcttcagctt 82  Q
    |||||||| ||||||||||||||||||||| |||||  |||| | ||||||||||    
T  31365905 atcttctctgctcttgaaggcttagcaggttcagcaggaccagaggcttcagctt 31365851  T

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