View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1963_low_2 (Length: 393)
Name: NF1963_low_2
Description: NF1963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 375
Target Start/End: Complemental strand, 36364 - 35988
Alignment:
| Q |
13 |
tcatcatttaataatgacgattaaaaggtaaaaaacaatgcttccggtaatgattctaaatctagtgaagtccgttttcaaccattatctatacttatca |
112 |
Q |
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| T |
36364 |
tcatcatttaataatgacgattaaaaggtaaaaaacaatgcttccggtaatgattctaaatctagtgaagtccgttt-caaccattatctatacttatca |
36266 |
T |
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| Q |
113 |
---------------taaatggtgtctggtaaaaaatgtggcaacagaaatagcaaaaactttcgtatatacttccagcacaaaacataaatagtacata |
197 |
Q |
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| T |
36265 |
ccaattcatgattcataaatggtgtctggtaaaaaatgtggcaacagaaatagcaaaaactttcatatatacttccagcacaaaacataaatagtacata |
36166 |
T |
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| Q |
198 |
atacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaacctgtgaggttaacttttacatcagttacggtacaaacaccaa |
297 |
Q |
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| T |
36165 |
atacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaacctttgaggttaacttttacatcagttacggtacaaacaccaa |
36066 |
T |
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| Q |
298 |
caccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgttgtgaagaatcctttccataacac |
375 |
Q |
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| T |
36065 |
caccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgttgtgaagaatcctttccataacac |
35988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 375
Target Start/End: Original strand, 8676538 - 8676661
Alignment:
| Q |
252 |
aaacctgtgaggttaacttttacatcagttacggtacaaacaccaacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgt |
351 |
Q |
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| T |
8676538 |
aaacctttgaagttaacatttacatcagttacggtgcaaacaccaacaccaataaccacaaccatgaccgacactttcacttcccttgagtagtgtttgc |
8676637 |
T |
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| Q |
352 |
tgtgaagaatcctttccataacac |
375 |
Q |
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| T |
8676638 |
tgtgaaggatccattccatcacac |
8676661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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