View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1963_low_6 (Length: 303)
Name: NF1963_low_6
Description: NF1963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963_low_6 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 33 - 294
Target Start/End: Complemental strand, 6326393 - 6326125
Alignment:
| Q |
33 |
ttccaaacctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctacaatt |
132 |
Q |
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| T |
6326393 |
ttccaaaactcaactcttctataagaaaagcaatattgaagaatgtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctacaatt |
6326294 |
T |
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| Q |
133 |
ccaaatgcaacttcaac------ttcatcagattcaacaaggtaaataacttcaattatcaatcactactcaaacattaacttactctgtttccccnnnn |
226 |
Q |
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| T |
6326293 |
gcaaatgcaacttcaacttcaacttcatcagcttcaacaaggtaaataacttcaattttcaatcactactcaaacattaacttactctgtttcccctttt |
6326194 |
T |
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| Q |
227 |
nnnnagtagaaccctgtttttccattcaag-nnnnnnnnnagtcaattgaagttcaatactagtataat |
294 |
Q |
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| T |
6326193 |
ttttagtagaaccctgtttttccattcaagatttttttttagtcaattgaagttcaatactagtataat |
6326125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 6333908 - 6333717
Alignment:
| Q |
1 |
tctttttccatgttttttcttcatatctctttttccaaacctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaag---ag |
97 |
Q |
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| T |
6333908 |
tctttttccctgttttttcttcatatctctttttccaaaactcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaagtttag |
6333809 |
T |
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| Q |
98 |
tttaacgaacaatggctgaattagaagc------tacaattccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaatt |
183 |
Q |
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| T |
6333808 |
tttgaagaacaatggctgaattaggagctacaattacaattccaaatgcaacttcaacttcatcagcttcaacaaggtaaataacttcaatt |
6333717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 6242427 - 6242582
Alignment:
| Q |
58 |
aaaagcaatattgaagaatgtgttgtactcatcaaaag---agtttaacgaacaatggctgaattagaagctacaattccaaatgc------aacttcaa |
148 |
Q |
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| T |
6242427 |
aaaagcaatattgaagaatgtgttgtacttatcaaaagttaagtttgaagaacaacggcagaattaggagctacaattccaaatgcaacttgaacttgaa |
6242526 |
T |
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| Q |
149 |
cttcatcagattcaacaaggtaaataacttcaattatcaatcactactcaaacatt |
204 |
Q |
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| T |
6242527 |
cttcatcggattcaataaggtaaataacttcaattttcaatcactactcaaacatt |
6242582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 6220904 - 6220993
Alignment:
| Q |
33 |
ttccaaacctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaa---gagtttaacgaacaatggctgaatt |
119 |
Q |
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| T |
6220904 |
ttccaaacatcaactattatataagtaaaccaatattgaagcatgtgttgtactcatcaaaagttgagtttgaagaacaatggcagaatt |
6220993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 595 - 810
Alignment:
| Q |
4 |
ttttccatgttttttcttcatatctctttttccaaacctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatca---aaag---ag |
97 |
Q |
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| T |
595 |
ttttccatgttttttcttcatagctctttttccaaacctcgactct------ataaaagcaatattgaagaatgtgttgtactcatcatcaaaagttgag |
688 |
T |
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| Q |
98 |
tttaacgaacaatggctgaattagaagctacaattccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaattatcaatcactactc |
197 |
Q |
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| T |
689 |
tttgaagaacaatggcagaattaggagctacaattccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaattttcaatcactactc |
788 |
T |
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| Q |
198 |
aaacattaacttactctgtttc |
219 |
Q |
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| T |
789 |
aaacattaacttactctgtttc |
810 |
T |
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