View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1963_low_8 (Length: 290)
Name: NF1963_low_8
Description: NF1963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 19597570 - 19597315
Alignment:
| Q |
19 |
agaaaccaccatcttcactgcagccacatcaatcttcactgccaccaaggccattttcattcctgcgaagaagaacgcaatctttaacggagctaccatc |
118 |
Q |
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| T |
19597570 |
agaaaccaccatcttcactgcagccacagcaatcttcattgccacgaaggccgttttcattcctgcgaagaagaacgcaatctttaacggagctaccatc |
19597471 |
T |
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| Q |
119 |
acaatccaatacaccatcttcaccgcagccaccacgaccaccatatcattctattctaccaacaaatctgtcgctggtaccatcttcttcatcacagcca |
218 |
Q |
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| T |
19597470 |
acaatccaatacaccatcttcaccgcagccaccacgaccaccatatcattctattctaccaacaaatctgtcgctggtaccatcttcttcatcacagcca |
19597371 |
T |
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| Q |
219 |
cctcgaacactgtattatgatatggtaccgtattggccactacgaccaccttgtta |
274 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19597370 |
cctcgaacactgtattataatatggtaccgtattggccactacgaccaccttgtta |
19597315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 19592874 - 19592817
Alignment:
| Q |
109 |
agctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatca |
166 |
Q |
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|||||||||| ||||||||| |||||| |||| |||||| ||||| |||||||||||| |
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| T |
19592874 |
agctaccatcccaatccaatgcaccattttcaacgcagcgaccacaaccaccatatca |
19592817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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