View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19640_high_2 (Length: 653)
Name: NF19640_high_2
Description: NF19640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19640_high_2 |
 | |
|
| [»] scaffold0029 (2 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 273 - 643
Target Start/End: Complemental strand, 27206239 - 27205869
Alignment:
| Q |
273 |
accaactctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctat |
372 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27206239 |
accatctctcgcagttctgtaatagttttagaaagatcgaataaaacgtcatttctaccaatctctcccactacaaacaacaattttttgaagaagctat |
27206140 |
T |
|
| Q |
373 |
cacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataatatgcagggagttaggacaaa |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27206139 |
cacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaatagtatgcagggagttaggacaaa |
27206040 |
T |
|
| Q |
473 |
accttctttagttttacacaaggagggtttaagcttcttaaaccaatcaaattgcatattcaaagagttaatgactctaccacctttgaaataattgaca |
572 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27206039 |
accttctttagttttacacgatgagggtttaagcttcttaaaccaatcaaattgcatattcaaagagttaatgactctaccacctttgaaataattgaca |
27205940 |
T |
|
| Q |
573 |
tcaagtgcagttgcaccaccataagcaaaattaactcccttttttacatcatcttgacttttggtgatatt |
643 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27205939 |
tcaagtgcagttgcaccgccataagcaaaattaactcccttttttacatcatcttgacttttggtgatatt |
27205869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 27206690 - 27206427
Alignment:
| Q |
19 |
tgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttag |
118 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27206690 |
tgctccacac-ccatattgttctggtgcttggtataaacgtttgacatcattgtaaacgtcaaagtatactatcttagcttgagggtgtttatgccttag |
27206592 |
T |
|
| Q |
119 |
tgtctttatggannnnnnnnnnnnnnn--attgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgac |
216 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27206591 |
tgtctttatggattttttaagttttttttattaaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgac |
27206492 |
T |
|
| Q |
217 |
taattttatttgacaataagtgagcagtacaccctattgaaaatttccctgaaaccaccaactct |
281 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| || |||||| |||||||||||||| |
|
|
| T |
27206491 |
taatcttatttgacaataagtgagcagtacatcctattgggaagttccctaaaaccaccaactct |
27206427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 278 - 646
Target Start/End: Original strand, 13003415 - 13003795
Alignment:
| Q |
278 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
377 |
Q |
| |
|
|||||| | |||| |||||||||||||||||| | |||| | ||||| ||||||||||||||||| |||||| |||||||||||||||| |||||| |
|
|
| T |
13003415 |
ctctcgtagttctttaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgattttttgaagaagctgtcacat |
13003514 |
T |
|
| Q |
378 |
tctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataatatgcagggagttaggacaaaacctt |
477 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||| || | || |||| |||||| ||| |||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
13003515 |
tctgtgaactcataaaaaaacaaaagttttgttagtcatatagatgataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaacctt |
13003614 |
T |
|
| Q |
478 |
ctttagttttacacaaggagggtttaagcttcttaaaccaatcaaattgcatattcaaagagtt---------aatgactctacca---cctttgaaata |
565 |
Q |
| |
|
|||| ||||||| ||| |||||| ||||||||||||||||||||||||| || || || | | |||||| || | || | ||||| |
|
|
| T |
13003615 |
ctttgcttttacataagtcgggttttagcttcttaaaccaatcaaattgcacatctaatgattcctttggtgcactgactccactaatgccactaaaata |
13003714 |
T |
|
| Q |
566 |
attgacatcaagtgcagttgcaccaccataagcaaaattaactcccttttttacatcatcttgacttttggtgatattctt |
646 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||| | |||||||||||||||| |
|
|
| T |
13003715 |
tttgacatcaagtgcagttgaaccggcataagcgaaattaactcccttttttatatcatctgggattttggtgatattctt |
13003795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 278 - 528
Target Start/End: Complemental strand, 31252171 - 31251921
Alignment:
| Q |
278 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
377 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| | |||| | ||||| ||||||||||||||||| |||||| | |||||||||||||| |||||| |
|
|
| T |
31252171 |
ctctcgtagttctgtaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacat |
31252072 |
T |
|
| Q |
378 |
tctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataatatgcagggagttaggacaaaacctt |
477 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||| || | || |||| |||||| ||| |||||||||| ||| | ||| ||||||||||||||| |
|
|
| T |
31252071 |
tctgtgaactcataaaaaaacaaaagttttgttagtcatatagatgataaaccatttatatcacacaaaaataacatgtaaggatttaggacaaaacctt |
31251972 |
T |
|
| Q |
478 |
ctttagttttacacaaggagggtttaagcttcttaaaccaatcaaattgca |
528 |
Q |
| |
|
||||| ||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
31251971 |
ctttacttttacataagtcgggttttagcttcttaaaccaatcaaattgca |
31251921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 278 - 646
Target Start/End: Original strand, 31094209 - 31094595
Alignment:
| Q |
278 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
377 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||| | | |||| | ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
31094209 |
ctcttgcagttctgtaatagttttgaaaagatggtaaaaaatatcatttccaccaatctctcccactataaacaacgattttttgaagaagctatcacat |
31094308 |
T |
|
| Q |
378 |
tctgtgaactcac---aacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataatatgcagggagttaggacaaaac |
474 |
Q |
| |
|
||||||||||||| || |||| ||| |||||||||||||| | | || ||| |||||| ||| |||||||||| | ||| |||||||||||||||| |
|
|
| T |
31094309 |
tctgtgaactcacaagaagaaaaaaaaagttttgttagtcatattgatgataaatcatttatatcacacaaaaataacaagcaaggagttaggacaaaac |
31094408 |
T |
|
| Q |
475 |
cttctttagttttacacaaggagggtttaagcttcttaaaccaatcaaattgcatattcaaagagt---------------taatgactctaccaccttt |
559 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||||||||||||||||||||||| | | || |||| || ||||| || ||| | |
|
|
| T |
31094409 |
cttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatgagttatctttctgtggtgtagagactccactaccact |
31094508 |
T |
|
| Q |
560 |
gaaataattgacatcaagtgcagttgcaccaccataagcaaaattaactcccttttttacatcatcttgacttttggtgatattctt |
646 |
Q |
| |
|
|||||| | || ||||||||||||| ||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
31094509 |
gaaatattcgatgtcaagtgcagttgaaccggcataagcgaaattaactcccttttttacatcaccttggcttttggtgatattctt |
31094595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 31093725 - 31093979
Alignment:
| Q |
20 |
gctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagt |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||| |||||||||||||||||||| ||||| || ||| | |
|
|
| T |
31093725 |
gctccacgcaccatattgttgtggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggtgtttctgttttatt |
31093824 |
T |
|
| Q |
120 |
gtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaa |
219 |
Q |
| |
|
||| |||||| ||| ||||||| ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31093825 |
atctctatggatttttttagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaa |
31093924 |
T |
|
| Q |
220 |
ttttatttgacaataagtgagcagtacaccctattgaaaatttccctgaaaccac |
274 |
Q |
| |
|
| || |||||||||| || || | |||||||||||| ||| || ||||||||||| |
|
|
| T |
31093925 |
tcttttttgacaatatgtcagtattacaccctattggaaagtttcctgaaaccac |
31093979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 13002924 - 13003179
Alignment:
| Q |
19 |
tgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttag |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| | ||| |||| |||||| | ||||| |||||||||||||||||||| ||||| || ||| |
|
|
| T |
13002924 |
tgctccacacaccatattgttgtggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttat |
13003023 |
T |
|
| Q |
119 |
tgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgacta |
218 |
Q |
| |
|
||||| |||||| ||| ||||||| |||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13003024 |
tgtctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgacta |
13003123 |
T |
|
| Q |
219 |
attttatttgacaataagtgagcagtacaccctattgaaaatttccctgaaaccac |
274 |
Q |
| |
|
|| || |||||||||| || || | ||||||| |||| ||| ||||||| |||||| |
|
|
| T |
13003124 |
atcttttttgacaatatgtcagtattacaccccattggaaagttccctggaaccac |
13003179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 31252662 - 31252407
Alignment:
| Q |
19 |
tgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttag |
118 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||| |||||| | ||| |||| |||||| | ||||| |||||||||||||||||||| ||||| || ||| |
|
|
| T |
31252662 |
tgctccacacaccatactgttgaggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttat |
31252563 |
T |
|
| Q |
119 |
tgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgacta |
218 |
Q |
| |
|
||||| |||||| ||| ||||||| |||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31252562 |
tgtctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgacta |
31252463 |
T |
|
| Q |
219 |
attttatttgacaataagtgagcagtacaccctattgaaaatttccctgaaaccac |
274 |
Q |
| |
|
|| || |||||||||| || || | ||||||| |||| ||| ||||||| |||||| |
|
|
| T |
31252462 |
atcttttttgacaatatgtcagtattacaccccattggaaagttccctggaaccac |
31252407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 16163352 - 16163137
Alignment:
| Q |
19 |
tgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttag |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| ||||| |||| ||||| ||||||| |||| ||||||||||||||||||||| |||| || |
|
|
| T |
16163352 |
tgctccacagaccatattgttgtggtgcttcatataaacgtttggcatcgttgtagtagtcaaaatatattatcttagcttgaggatgtttctgccgtaa |
16163253 |
T |
|
| Q |
119 |
tgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgacta |
218 |
Q |
| |
|
||||| |||||| ||| ||||||| |||||||||||||| ||||| ||||||||||||| |||||| || |||||||| || ||| |
|
|
| T |
16163252 |
tgtctctatggatttttttagttgctcattaaagtattcgatgaaagagttgtaagctattaaacatccaaattcatcataatcctctttcttttggcta |
16163153 |
T |
|
| Q |
219 |
attttatttgacaata |
234 |
Q |
| |
|
|| || |||| ||||| |
|
|
| T |
16163152 |
atcttttttgtcaata |
16163137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 561 - 646
Target Start/End: Complemental strand, 31251876 - 31251791
Alignment:
| Q |
561 |
aaataattgacatcaagtgcagttgcaccaccataagcaaaattaactcccttttttacatcatcttgacttttggtgatattctt |
646 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||| || ||||||||||||||||||| ||||||| | |||||||||||||||| |
|
|
| T |
31251876 |
aaatatttgacatcaagtgcagttgaaccggcataggcgaaattaactcccttttttatatcatctgggattttggtgatattctt |
31251791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 442 - 542
Target Start/End: Complemental strand, 27228810 - 27228710
Alignment:
| Q |
442 |
acaaaaataatatgcagggagttaggacaaaaccttctttagttttacacaaggagggtttaagcttcttaaaccaatcaaattgcatattcaaagagtt |
541 |
Q |
| |
|
|||||||||||| ||| | ||||| |||||||||||||| | |||||||||| || ||||| | ||||||||||| |||||||||| ||| || ||||| |
|
|
| T |
27228810 |
acaaaaataatacgcaagtagttatgacaaaaccttcttcacttttacacaatgatggttttatattcttaaaccattcaaattgcacatttaatgagtt |
27228711 |
T |
|
| Q |
542 |
a |
542 |
Q |
| |
|
| |
|
|
| T |
27228710 |
a |
27228710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 16162891 - 16162788
Alignment:
| Q |
279 |
tctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacatt |
378 |
Q |
| |
|
||||||| |||||||||||||||||||| || || ||||| | ||||| |||||| |||||||||| ||| || || |||||||||||||||||| | |
|
|
| T |
16162891 |
tctcgcagttctgtaatagttttagaaatatgtaaaaaaacatcatttccaccaatttctcccactataaataatgatcgtttgaagaagctatcacact |
16162792 |
T |
|
| Q |
379 |
ctgt |
382 |
Q |
| |
|
|||| |
|
|
| T |
16162791 |
ctgt |
16162788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 27229209 - 27229150
Alignment:
| Q |
159 |
atgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgacta |
218 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
27229209 |
atgaaagtgttgtaagttatcaaacatccaaattcatcataatcttctttcttctgacta |
27229150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 25658762 - 25658664
Alignment:
| Q |
25 |
acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct |
123 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||| |||||| || ||||| ||||||| |||| ||||||||||||||| | |||||| |||| ||||| |
|
|
| T |
25658762 |
acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct |
25658664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 25665167 - 25665069
Alignment:
| Q |
25 |
acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct |
123 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||| |||||| || ||||| ||||||| |||| ||||||||||||||| | |||||| |||| ||||| |
|
|
| T |
25665167 |
acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct |
25665069 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 25671572 - 25671474
Alignment:
| Q |
25 |
acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct |
123 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||| |||||| || ||||| ||||||| |||| ||||||||||||||| | |||||| |||| ||||| |
|
|
| T |
25671572 |
acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct |
25671474 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 25677977 - 25677879
Alignment:
| Q |
25 |
acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct |
123 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||| |||||| || ||||| ||||||| |||| ||||||||||||||| | |||||| |||| ||||| |
|
|
| T |
25677977 |
acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct |
25677879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 25684653 - 25684555
Alignment:
| Q |
25 |
acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct |
123 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||| |||||| || ||||| ||||||| |||| ||||||||||||||| | |||||| |||| ||||| |
|
|
| T |
25684653 |
acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct |
25684555 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 27229337 - 27229267
Alignment:
| Q |
31 |
catattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttga |
101 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||| |||||| ||||||||||| |||| |||||||| |
|
|
| T |
27229337 |
catattgttgtggtgattgatataaacgtttgacaatattgtagtggtcaaagtatattatcctagcttga |
27229267 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 18364 - 18459
Alignment:
| Q |
28 |
caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct |
123 |
Q |
| |
|
||||||||||||| |||| ||| |||||| ||||| ||||||| || |||||||||||| ||||||| ||| ||| || || || |||||||||| |
|
|
| T |
18364 |
caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct |
18459 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 43376 - 43471
Alignment:
| Q |
28 |
caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct |
123 |
Q |
| |
|
||||||||||||| |||| ||| |||||| |||| ||||||| || |||||||||||| ||||||| ||| ||| || || || |||||||||| |
|
|
| T |
43376 |
caccatattgttgcggtgtttgatataaacatttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct |
43471 |
T |
|
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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 33120609 - 33120704
Alignment:
| Q |
28 |
caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct |
123 |
Q |
| |
|
||||||||||||| |||| ||| |||||| ||||| ||||||| || |||||||||||| ||||||| ||| ||| || || || |||||||||| |
|
|
| T |
33120609 |
caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct |
33120704 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 33130352 - 33130447
Alignment:
| Q |
28 |
caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct |
123 |
Q |
| |
|
||||||||||||| |||| ||| |||||| ||||| ||||||| || |||||||||||| ||||||| ||| ||| || || || |||||||||| |
|
|
| T |
33130352 |
caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct |
33130447 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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