View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19640_low_10 (Length: 238)

Name: NF19640_low_10
Description: NF19640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19640_low_10
NF19640_low_10
[»] chr3 (12 HSPs)
chr3 (19-220)||(27206488-27206690)
chr3 (20-220)||(31093725-31093925)
chr3 (19-220)||(13002924-13003125)
chr3 (19-220)||(16163151-16163352)
chr3 (19-220)||(31252461-31252662)
chr3 (159-218)||(27229150-27229209)
chr3 (25-123)||(25658664-25658762)
chr3 (25-123)||(25665069-25665167)
chr3 (25-123)||(25671474-25671572)
chr3 (25-123)||(25677879-25677977)
chr3 (25-123)||(25684555-25684653)
chr3 (31-101)||(27229267-27229337)
[»] scaffold0029 (2 HSPs)
scaffold0029 (28-123)||(18364-18459)
scaffold0029 (28-123)||(43376-43471)
[»] chr2 (2 HSPs)
chr2 (28-123)||(33120609-33120704)
chr2 (28-123)||(33130352-33130447)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 27206690 - 27206488
Alignment:
Q  19 tgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttag 118  Q
    |||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  27206690 tgctccacac-ccatattgttctggtgcttggtataaacgtttgacatcattgtaaacgtcaaagtatactatcttagcttgagggtgtttatgccttag 27206592  T
Q  119 tgtctttatgga--nnnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgac 216  Q
    ||||||||||||                 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27206591 tgtctttatggattttttaagttttttttattaaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgac 27206492  T
Q  217 taat 220  Q
    ||||    
T  27206491 taat 27206488  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 31093725 - 31093925
Alignment:
Q  20 gctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagt 119  Q
    ||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||| |||||||||||||||||||| ||||| ||  ||| |    
T  31093725 gctccacgcaccatattgttgtggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggtgtttctgttttatt 31093824  T
Q  120 gtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaa 219  Q
     ||| ||||||               ||| |||||||  ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  31093825 atctctatggatttttttagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaa 31093924  T
Q  220 t 220  Q
    |    
T  31093925 t 31093925  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 13002924 - 13003125
Alignment:
Q  19 tgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttag 118  Q
    ||||||||||||||||||||||||||| ||| |||||| | ||| |||| |||||| | ||||| |||||||||||||||||||| ||||| ||  |||     
T  13002924 tgctccacacaccatattgttgtggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttat 13003023  T
Q  119 tgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgacta 218  Q
    ||||| ||||||               ||| |||||||  |||| || |||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  13003024 tgtctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgacta 13003123  T
Q  219 at 220  Q
    ||    
T  13003124 at 13003125  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 16163352 - 16163151
Alignment:
Q  19 tgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttag 118  Q
    ||||||||| ||||||||||||||||||||  |||||| ||||| |||| |||||  ||||||| |||| ||||||||||||||||||||| |||| ||     
T  16163352 tgctccacagaccatattgttgtggtgcttcatataaacgtttggcatcgttgtagtagtcaaaatatattatcttagcttgaggatgtttctgccgtaa 16163253  T
Q  119 tgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgacta 218  Q
    ||||| ||||||               ||| |||||||  |||||||||||||| ||||| ||||||||||||| |||||| || |||||||| || |||    
T  16163252 tgtctctatggatttttttagttgctcattaaagtattcgatgaaagagttgtaagctattaaacatccaaattcatcataatcctctttcttttggcta 16163153  T
Q  219 at 220  Q
    ||    
T  16163152 at 16163151  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 31252662 - 31252461
Alignment:
Q  19 tgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttag 118  Q
    |||||||||||||||| ||||| |||| ||| |||||| | ||| |||| |||||| | ||||| |||||||||||||||||||| ||||| ||  |||     
T  31252662 tgctccacacaccatactgttgaggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttat 31252563  T
Q  119 tgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgacta 218  Q
    ||||| ||||||               ||| |||||||  |||| || |||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  31252562 tgtctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgacta 31252463  T
Q  219 at 220  Q
    ||    
T  31252462 at 31252461  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 27229209 - 27229150
Alignment:
Q  159 atgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgacta 218  Q
    ||||||| |||||| | ||||||||||||||||| |||||| ||||||||||||||||||    
T  27229209 atgaaagtgttgtaagttatcaaacatccaaattcatcataatcttctttcttctgacta 27229150  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 25658762 - 25658664
Alignment:
Q  25 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 123  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25658762 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25658664  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 25665167 - 25665069
Alignment:
Q  25 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 123  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25665167 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25665069  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 25671572 - 25671474
Alignment:
Q  25 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 123  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25671572 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25671474  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 25677977 - 25677879
Alignment:
Q  25 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 123  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25677977 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25677879  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 25684653 - 25684555
Alignment:
Q  25 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 123  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25684653 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25684555  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 27229337 - 27229267
Alignment:
Q  31 catattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttga 101  Q
    ||||||||||||||| ||| |||||| ||||||||  ||||||   ||||||||||| |||| ||||||||    
T  27229337 catattgttgtggtgattgatataaacgtttgacaatattgtagtggtcaaagtatattatcctagcttga 27229267  T

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Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 18364 - 18459
Alignment:
Q  28 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 123  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  18364 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 18459  T

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Target: scaffold0029; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 43376 - 43471
Alignment:
Q  28 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 123  Q
    ||||||||||||| |||| ||| ||||||  |||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  43376 caccatattgttgcggtgtttgatataaacatttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 43471  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 33120609 - 33120704
Alignment:
Q  28 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 123  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  33120609 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 33120704  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 33130352 - 33130447
Alignment:
Q  28 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 123  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  33130352 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 33130447  T

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