View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19640_low_2 (Length: 761)
Name: NF19640_low_2
Description: NF19640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19640_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 28 - 745
Target Start/End: Complemental strand, 24629043 - 24628335
Alignment:
| Q |
28 |
aaataggtggaatttcaaaattcctcattttaggaggnnnnnnnntacttcacaaaaatcacaaggatttcaaaaatgctttaaacatatttgtcaaaca |
127 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24629043 |
aaataggtggaatttcaaaattcctcattttaggaggaaaaaag-tacttcacaaaaatcacaaggatttcaaaaatgctttaaacatatttgtcaaaca |
24628945 |
T |
|
| Q |
128 |
atgtatccgaacactctaaaattctaaatattttattgaaaaatggattaacaagtcaactggaagtaatcagaaacaattagagctgatttttacannn |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
24628944 |
atgtatccgaacactctaaaattctaaatattttattgaaaaatggattaacaagtcaactggaagtattcagaaacaattagagctgattttgacattt |
24628845 |
T |
|
| Q |
228 |
nnnnna--agcttttgactttcattaaaaacatataa--tatccttaatctctcaaataaatgatttcctaagaacataacattaggtgtaaactgtaat |
323 |
Q |
| |
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| || ||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24628844 |
tttttataagattttgacattcattaaaaacaaataagatatccttaatctctcaaataaatgatttcctaagaacataacattaggtgtaaactgtaat |
24628745 |
T |
|
| Q |
324 |
aactcaaccaacaacagtgattttagattaaataacatagaaagaaagtgagaattgctaaagttgtagccaaatataaaaatcaaccagccactaaaac |
423 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |
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| T |
24628744 |
agctcaaccaacaacagtgattttagattaaataacatagaaagaaaatgagaattgc------------caaatataaaaattaaccagccactaaaac |
24628657 |
T |
|
| Q |
424 |
agtgaaggggtcctcacaaatcaacaagataaagaactacagaatcagattagtcttcaacatggccatattaaagatccacaattacattttcctcttg |
523 |
Q |
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| | ||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
24628656 |
actaaagttgtcctcacaaatcaacaagataaagaactacagaatcagattagtctccatcatggccatattaaagatccacaattacattttcctcttg |
24628557 |
T |
|
| Q |
524 |
aaaccttgaaatttacttataaaagtttacaattagaaacataaatcatccgatcctgttcactactggttcaagtgcctctacagtgacaacactattt |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24628556 |
aaaccttgaaatttacttataaaagtttacaattagaaacataaatcatccgatcctgttcactactggttcaagtgcctctacagtgacaacactattt |
24628457 |
T |
|
| Q |
624 |
cctctgattacctgcaaaaaagtgagtgaaattaacaacaataatgcagatatcagctgctaatattcaagttaatagtaatgcagaacatgaggagtta |
723 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24628456 |
cctctgattacctgcaaaaaagtgagtgaaattaacaacaacaatgcagatatcagctgctaatattcaagttaatagtaatgcagaacatgaggagtta |
24628357 |
T |
|
| Q |
724 |
cttaccaccattcctatgtcat |
745 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
24628356 |
cttaccaccatccctatgtcat |
24628335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 521 - 590
Target Start/End: Complemental strand, 24634629 - 24634561
Alignment:
| Q |
521 |
ttgaaaccttgaaatttacttataaaagtttacaattagaaacataaatcatccgatcctgttcactact |
590 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||| |||||| |
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| T |
24634629 |
ttgaaaccttgaaatttacttatagaagtttacaatt-gaaacataaattagaagatcctgtttactact |
24634561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 521 - 639
Target Start/End: Original strand, 42542337 - 42542449
Alignment:
| Q |
521 |
ttgaaaccttgaaatttacttataaaagtttacaattagaaacataaatcatccgatcctgttcactactggttcaagtgcctctacagtgacaacacta |
620 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| ||||| | || | | | ||||||||| |||||||| || ||||||||||| |||||| |
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| T |
42542337 |
ttgaaaccttgaaatttacttataaatgtttacaat---aaacagatattagatgcttctgttcact---ggttcaagcgcttctacagtgaccacacta |
42542430 |
T |
|
| Q |
621 |
tttcctctgattacctgca |
639 |
Q |
| |
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||||||||||| ||||||| |
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| T |
42542431 |
tttcctctgatcacctgca |
42542449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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