View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19640_low_4 (Length: 381)
Name: NF19640_low_4
Description: NF19640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19640_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 171 - 364
Target Start/End: Original strand, 51848235 - 51848428
Alignment:
| Q |
171 |
caagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcc |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51848235 |
caagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcc |
51848334 |
T |
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| Q |
271 |
atgatagcttaaagaatagcttataacttacatgaaaacaattgacttgattttcaattttgttaaaaatgacttataaaattgtgcactattt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
51848335 |
gtgatagcttaaagaatagcttataacttacatgaaaacaattgacttgattttcaattttgttagaaatgacttataaaattgtgcaccattt |
51848428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 51848078 - 51848185
Alignment:
| Q |
16 |
atagacctaagcaactaacagtatcaaataaaattattatgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcattatttttaattca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51848078 |
atagacctaagcaactaacagtatcaaataaaattattctgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcatttattttaattca |
51848177 |
T |
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| Q |
116 |
acctctta |
123 |
Q |
| |
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|||||||| |
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| T |
51848178 |
acctctta |
51848185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 172 - 363
Target Start/End: Complemental strand, 13578400 - 13578209
Alignment:
| Q |
172 |
aagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcca |
271 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13578400 |
aagttaaggaaatggaagtacatacaaccacagaacctgcatatatgtacttagataattttttaaaagttatttttaatttatcttcgtaagctctcca |
13578301 |
T |
|
| Q |
272 |
tgatagcttaaagaatagcttataacttacatgaaaacaattgacttgattttcaattttgttaaaaatgacttataaaattgtgcactatt |
363 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13578300 |
tgatagcttaaagaatagcttataacttacatgaaaacaattgacttgattttcaattttgttagaaatgacttataaaattgtgcactatt |
13578209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 13578545 - 13578438
Alignment:
| Q |
16 |
atagacctaagcaactaacagtatcaaataaaattattatgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcattatttttaattca |
115 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13578545 |
atagacctaagcatctaacagtatcaaataaaattattctgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcattttttttaattca |
13578446 |
T |
|
| Q |
116 |
acctctta |
123 |
Q |
| |
|
|||||||| |
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|
| T |
13578445 |
acctctta |
13578438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 172 - 363
Target Start/End: Complemental strand, 26888044 - 26887852
Alignment:
| Q |
172 |
aagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcca |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26888044 |
aagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcca |
26887945 |
T |
|
| Q |
272 |
tgatagc-ttaaagaatagcttataacttacatgaaaacaattgacttgattttcaattttgttaaaaatgacttataaaattgtgcactatt |
363 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||| |
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| T |
26887944 |
tgatagctttaaagaatagcttataacttacatgaaaacaattgacttgattttcacttttgttagaaataacatataaaattgtgcactatt |
26887852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 26888197 - 26888090
Alignment:
| Q |
16 |
atagacctaagcaactaacagtatcaaataaaattattatgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcattatttttaattca |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
26888197 |
atagacctaagcaactaaaggtatcaaataaaattattctgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcaactttttcaattca |
26888098 |
T |
|
| Q |
116 |
acctctta |
123 |
Q |
| |
|
|||||||| |
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| T |
26888097 |
acctctta |
26888090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 171 - 334
Target Start/End: Original strand, 8943756 - 8943917
Alignment:
| Q |
171 |
caagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcc |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8943756 |
caagttaaggaaatggaagtacatacaaccacagaacctgcatatatgtacttagataattttttaaaagttatttttaatttatcttcgtaagctctcc |
8943855 |
T |
|
| Q |
271 |
atgatagcttaaagaatagcttataacttacatgaaaacaattgacttgattttcaattttgtt |
334 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8943856 |
atgatagcttaaag--tagcttataacttacatgaaaacaattgacttgattttcaattttgtt |
8943917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 8943596 - 8943703
Alignment:
| Q |
16 |
atagacctaagcaactaacagtatcaaataaaattattatgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcattatttttaattca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
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| T |
8943596 |
atagacctaagcaactaacagtatcaaataaaattattctgatagttgaagcaaccatatatcttaggagatgcaagcataaatcatttttttaaattca |
8943695 |
T |
|
| Q |
116 |
acctctta |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
8943696 |
acctctta |
8943703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 24782113 - 24782041
Alignment:
| Q |
242 |
tatttttagtttatcttcgtaagctctccatgatagcttaaagaa-tagcttataacttacatgaaaacaatt |
313 |
Q |
| |
|
|||||||||||||| ||| ||||||||| | ||||| ||| || |||||||||||||| |||||||||||| |
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| T |
24782113 |
tatttttagtttattttcataagctctcaaggatagtttattaaagtagcttataacttatatgaaaacaatt |
24782041 |
T |
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