View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19640_low_5 (Length: 364)

Name: NF19640_low_5
Description: NF19640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19640_low_5
NF19640_low_5
[»] chr5 (14 HSPs)
chr5 (18-349)||(1043785-1044116)
chr5 (22-349)||(1033393-1033725)
chr5 (22-155)||(1053237-1053370)
chr5 (26-150)||(1071326-1071450)
chr5 (22-151)||(1065598-1065727)
chr5 (26-154)||(1058503-1058631)
chr5 (23-151)||(1640832-1640960)
chr5 (46-140)||(1046577-1046671)
chr5 (283-338)||(1071141-1071196)
chr5 (283-349)||(1065391-1065457)
chr5 (90-170)||(1041528-1041607)
chr5 (289-349)||(1046331-1046391)
chr5 (289-349)||(1052991-1053051)
chr5 (289-337)||(1058339-1058387)
[»] chr3 (2 HSPs)
chr3 (35-219)||(44171335-44171521)
chr3 (35-219)||(44191631-44191817)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 1044116 - 1043785
Alignment:
Q  18 aaggaaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1044116 aaggaaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctcc 1044017  T
Q  118 atggatttcaactccatcaaaaccttcaatttgcaccacattgattatgttaggagatttaaaaaatgtccttgtgctttaaagcaacaaatagtcatgt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1044016 atggatttcaactccatcaaaaccttcaatttgcaccacattgattatgttaggagatttgaaaaatgtccttgtgctttaaagcaacaaatagtcatgt 1043917  T
Q  218 ttctgaaaaaatatcaatattgtactatggtatttttcaattttagacaaaatttgtaaaaacctgtaaacttaccagcttcaatagcatttcttgaagc 317  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1043916 ttctgaaaaaatatcaatattgtactatggcatttttcaattttagacaaaatttgtaaaaacctgtaaacttaccagcttcaatagcatttcttgcagc 1043817  T
Q  318 gagtctgaaatcattgacaatatgaggaattt 349  Q
     |||||||||||||||||||||||||||||||    
T  1043816 aagtctgaaatcattgacaatatgaggaattt 1043785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 22 - 349
Target Start/End: Complemental strand, 1033725 - 1033393
Alignment:
Q  22 aaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgg 121  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1033725 aaatcgacaacgattctcaagggatccaccatattcatctgttctatcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatga 1033626  T
Q  122 atttcaactccatcaaaaccttcaatttgcaccacattgattatgttaggagatttaaaaaatgtcc--ttgtgctttaaagcaacaaatagtcatgttt 219  Q
    | |||||| |||||||||||| ||||||||| ||||||||  |||||||  |||||  |||||||||   ||  |||||||||||||||||||| |||||    
T  1033625 agttcaacaccatcaaaacctgcaatttgcatcacattgagcatgttagttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcctgttt 1033526  T
Q  220 ctgaaaaaatatcaatattgtactatggt------atttttcaattttagacaaaatttgtaaaaacctgtaaacttaccagcttcaatagcatttcttg 313  Q
    ||| ||||||||||||||||||||||| |      |  ||||   ||| ||  ||||||||| | | |   |||||||||||||||||||||||||||||    
T  1033525 ctg-aaaaatatcaatattgtactatgattgaatcacatttc--gtttggaataaatttgtacagatccacaaacttaccagcttcaatagcatttcttg 1033429  T
Q  314 aagcgagtctgaaatcattgacaatatgaggaattt 349  Q
     |||||||||||| ||||| ||||||| ||||||||    
T  1033428 cagcgagtctgaagtcatttacaatattaggaattt 1033393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 1053370 - 1053237
Alignment:
Q  22 aaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgg 121  Q
    ||||| ||||||||| || |||| |||||| ||||||||||||||||| ||  |||||||||||||||||||||||| ||||||||||||||||||||||    
T  1053370 aaatctacaacgattttcaagggttccaccatattcatctgttctgtcgtttgctttatctttcatgaattgttcaactaggtagccatgagctccatgg 1053271  T
Q  122 atttcaactccatcaaaaccttcaatttgcacca 155  Q
    |||||||| |||||||||||| ||||||||||||    
T  1053270 atttcaaccccatcaaaacctacaatttgcacca 1053237  T

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Target: chr5; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 1071450 - 1071326
Alignment:
Q  26 cgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggattt 125  Q
    |||||||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1071450 cgacaacggttctcaagggatccaccatactcatctgtcctgtcattcactttatctttcatgaattgttcaaggaggtagccatgagctccatggattt 1071351  T
Q  126 caactccatcaaaaccttcaatttg 150  Q
    |||| |||||||| ||| |||||||    
T  1071350 caaccccatcaaatcctgcaatttg 1071326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 1065727 - 1065598
Alignment:
Q  22 aaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgg 121  Q
    ||||||||| || ||||| || || ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  1065727 aaatcgacagcggttctccagagacccaccatattcatctgtcctgtcattcactttatctttcatgaattgctcaaggaggtagccatgagctccatgg 1065628  T
Q  122 atttcaactccatcaaaaccttcaatttgc 151  Q
    |||||||| |||||||| ||| ||||||||    
T  1065627 atttcaaccccatcaaatcctgcaatttgc 1065598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 1058631 - 1058503
Alignment:
Q  26 cgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggattt 125  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| ||||||||||    
T  1058631 cgacaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggattt 1058532  T
Q  126 caactccatcaaaaccttcaatttgcacc 154  Q
    |||| |||||||| ||| |||||||||||    
T  1058531 caaccccatcaaaccctgcaatttgcacc 1058503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 1640832 - 1640960
Alignment:
Q  23 aatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgga 122  Q
    ||||||||||| || || |||| ||||||||||| ||| |||| ||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||    
T  1640832 aatcgacaacggttttcaagggttccaccgtatttatcagttcggtcattcactttatctttcataaattgctcaagtaggtaaccgtgagccccatgga 1640931  T
Q  123 tttcaactccatcaaaaccttcaatttgc 151  Q
    | |||||||||||||||||| ||||||||    
T  1640932 tctcaactccatcaaaacctgcaatttgc 1640960  T

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Target: chr5; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 1046671 - 1046577
Alignment:
Q  46 tccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaac 140  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  ||| ||| | |||||||| ||||||||||    
T  1046671 tccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtatccagtagccccacgaatttcaaccccatcaaaac 1046577  T

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Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 1071196 - 1071141
Alignment:
Q  283 gtaaacttaccagcttcaatagcatttcttgaagcgagtctgaaatcattgacaat 338  Q
    ||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  1071196 gtaaagttaccagcttcaatagcatttcttgcagcgagtctgaagtcattgacaat 1071141  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 349
Target Start/End: Complemental strand, 1065457 - 1065391
Alignment:
Q  283 gtaaacttaccagcttcaatagcatttcttgaagcgagtctgaaatcattgacaatatgaggaattt 349  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||| | ||||||||    
T  1065457 gtaaagttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaatgttaggaattt 1065391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 1041607 - 1041528
Alignment:
Q  90 attgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttgcaccacattgattatgttag 170  Q
    |||| ||||||||||||||||||| | ||||||||||| | ||||||||||||  |||||||||||||||||  |||||||    
T  1041607 attgctcaagtaggtagccatgagttgcatggatttcatc-ccatcaaaacctgaaatttgcaccacattgagcatgttag 1041528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 1046391 - 1046331
Alignment:
Q  289 ttaccagcttcaatagcatttcttgaagcgagtctgaaatcattgacaatatgaggaattt 349  Q
    ||||||||||||||||||||||||| ||| ||||| || ||||||||||||| ||||||||    
T  1046391 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaattt 1046331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 1053051 - 1052991
Alignment:
Q  289 ttaccagcttcaatagcatttcttgaagcgagtctgaaatcattgacaatatgaggaattt 349  Q
    ||||||||||||||||||||||||| ||| ||||| || ||||||||||||| ||||||||    
T  1053051 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaattt 1052991  T

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Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 1058387 - 1058339
Alignment:
Q  289 ttaccagcttcaatagcatttcttgaagcgagtctgaaatcattgacaa 337  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  1058387 ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaa 1058339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 44171335 - 44171521
Alignment:
Q  35 ttctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccat 134  Q
    ||||| ||||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||    
T  44171335 ttctctagggatccaccatattcatctgttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccat 44171434  T
Q  135 caaaaccttcaatttgcaccacattgattatgttaggagatttaaaaaatgtcc--ttgtgctttaaagcaacaaatagtcatgttt 219  Q
    |||||||| ||||||||| ||||||||  ||||||   |||||  |||||||||   ||  ||||||||||||||||||||||||||    
T  44171435 caaaacctgcaatttgcatcacattgagcatgttacttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcatgttt 44171521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 44191631 - 44191817
Alignment:
Q  35 ttctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccat 134  Q
    ||||| ||||||||||| |||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||    
T  44191631 ttctctagggatccaccatattcatctgttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccat 44191730  T
Q  135 caaaaccttcaatttgcaccacattgattatgttaggagatttaaaaaatgtcc--ttgtgctttaaagcaacaaatagtcatgttt 219  Q
    |||||||| ||||||||| ||||||||  ||||||   |||||  |||||||||   ||  ||||||||||||||||||||||||||    
T  44191731 caaaacctgcaatttgcatcacattgagcatgttacttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcatgttt 44191817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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