View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19640_low_6 (Length: 364)
Name: NF19640_low_6
Description: NF19640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19640_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 364
Target Start/End: Complemental strand, 1967357 - 1966998
Alignment:
| Q |
6 |
attcatgacattggaaggttttggaaaggtgagtaaatttattttagttttatttgaggaatgtatttatgtgtttgggcaccaccatcttatgagctag |
105 |
Q |
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| T |
1967357 |
attcatgacattggaaggttttggaaaggtgagtaaatttattttagttttatttgaggaatgtatttatgtgtttgggcaccaccatcttatgagctag |
1967258 |
T |
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| Q |
106 |
ttttcaccagtcaggtacaaacaatatattatatgagctaaattgcgagtaaatttaagttattactg-attgaggtgtttctaaaatgatatttaaaag |
204 |
Q |
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| T |
1967257 |
ttttcaccagtcagatacaaacaatatattatatgagctaaattgcgagtaaattgaagttattactggagtgaggtgtttctaaaatgatatttaaaag |
1967158 |
T |
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| Q |
205 |
tggtatttatagacatatgttaagaacataattcctactagccgtgacttcagtagactaaagatacgctccaactgtcgtcgctcaactaaactcgcat |
304 |
Q |
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| T |
1967157 |
tggtatttatagacatatgttaagaacataattcctactagccgtgacttcagtagactaaagatacgctccaactgtcgtcgctcaactaaactcgcat |
1967058 |
T |
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| Q |
305 |
ggttgtgtttgagtttgtggcctgtctttttctatcctggcattctcatgttatgcgact |
364 |
Q |
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| T |
1967057 |
ggttgtgtttgagtttgtggcctgtctttttctatcctggcattctcatgttatccgact |
1966998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 356
Target Start/End: Original strand, 2009520 - 2009871
Alignment:
| Q |
6 |
attcatgacattggaaggttttggaaaggtgagtaaatttattttagttttatttgaggaatgtatttatgtgtttgggcaccaccatcttatgagctag |
105 |
Q |
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| T |
2009520 |
attcatgacattggaaggttttggaaaggtgagtaaatttattttagttttatttgaggaatgtatttatgtgtttgggcaccaccatcttatgagctag |
2009619 |
T |
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| Q |
106 |
ttttcaccagtcaggtacaaacaatatattatatgagctaaattgcgagtaaatttaagttattactgattgaggtgtttctaaaatgatatttaaaagt |
205 |
Q |
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| T |
2009620 |
ttttcaccagtcagatagaaacaatatattatatgagctaaattgcgagtaaattgaagttattactgattgaggtgtttctaaaatgatatttaaaagt |
2009719 |
T |
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| Q |
206 |
ggtatttatagacatatgttaagaacataattcctactagccgtgacttcagtagactaaagatacgctccaactgtcgtcgctcaactaaactcgcatg |
305 |
Q |
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| T |
2009720 |
ggtatttatagacatatgttaagaacataattcctactagccgtgacttcagtagactaaagatacgctccaactgtcgccgctcaactaaactcgcatg |
2009819 |
T |
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| Q |
306 |
gttgtgtttgagtttgtggcctgtc-tttttctatcctggcattctcatgtt |
356 |
Q |
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| T |
2009820 |
gttgtgtttcggtttgtggcctgtcttttttaaatcctggcattctcatgtt |
2009871 |
T |
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Back To:
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