View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19640_low_9 (Length: 250)
Name: NF19640_low_9
Description: NF19640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19640_low_9 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 40 - 250
Target Start/End: Original strand, 1966802 - 1967012
Alignment:
| Q |
40 |
gagccgtttccagagcagccaaacttggtctaattgaatctttgttagctgtaactggggctatttagccgttttgatgtcaaaacacattgattattcg |
139 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1966802 |
gagccgattccagagcagccaaacttggtctaattgaatctttgttagctgtaactggggctatttagccgttttgatgtcaaaacacattgattattcg |
1966901 |
T |
|
| Q |
140 |
gcatcattgattatatttcatctttcggttgggcgcgataactagtttcaagggagcggggtcaagagagaggaggcgtatgagcacaaccgaaacagtc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1966902 |
gcatcattgattatatttcatctttcggttggacgcgataactagtttcaagggagcggggtcaagagagaggaggcgtatgagcacaaccgaaacagtc |
1967001 |
T |
|
| Q |
240 |
gcataacatga |
250 |
Q |
| |
|
| ||||||||| |
|
|
| T |
1967002 |
ggataacatga |
1967012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 47 - 250
Target Start/End: Complemental strand, 2010068 - 2009865
Alignment:
| Q |
47 |
ttccagagcagccaaacttggtctaattgaatctttgttagctgtaactggggctatttagccgttttgatgtcaaaacacattgattattcggcatcat |
146 |
Q |
| |
|
||||||||||||| |||| ||||| |||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
2010068 |
ttccagagcagccgaactcagtctagttgaatatttggtagctgtaactggggctatttagccgttttggtgtcaaaacatattgattattcggaatcat |
2009969 |
T |
|
| Q |
147 |
tgattatatttcatctttcggttgggcgcgataactagtttcaagggagcggggtcaagagagaggaggcgtatgagcacaaccgaaacagtcgcataac |
246 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||| || ||| |
|
|
| T |
2009968 |
tgattatatttcatctttaggttgggcgtgataactaatttcaagggagcgggatcaagagagtggaggcgcatgagcacaactagaacagtctcagaac |
2009869 |
T |
|
| Q |
247 |
atga |
250 |
Q |
| |
|
|||| |
|
|
| T |
2009868 |
atga |
2009865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University