View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19641_high_1 (Length: 445)
Name: NF19641_high_1
Description: NF19641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19641_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 6693334 - 6692914
Alignment:
| Q |
11 |
cagagatggccaggactgaggtatagttttttcgacttctttttccgccctcttttgtagagataggatgctccaatactaacagttaagaatattcaaa |
110 |
Q |
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| T |
6693334 |
cagagatggccaggactgaggtatagttttttcgacttctttttccgccctcttttgtagagataggatgctccaatactaacagttaagaatattcaaa |
6693235 |
T |
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| Q |
111 |
atttctttaaaagtgagtgtttggtgtaattctgtatctggccttatagcattcgtttgttatggtgaccttaggttgttaagcaattgtgggcctatat |
210 |
Q |
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| T |
6693234 |
atttctttaaaagtgagtgtttggtgtaattctgtatctggccttatagcattcgtttgttatggtgaccttaggttgttaagcaattgtgggcctatat |
6693135 |
T |
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| Q |
211 |
tagggagaaagatttgcaagacccaaacaataggagaaatatcatttgcgatgaaccgctgcgtgccctttttggtgttgacaccatcaatatgttccaa |
310 |
Q |
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| T |
6693134 |
tagggagaaagatttgcaagacccaaacaataggagaaatatcatttgcgatgaaccgctgcgtgccctttttggtgttgacaccatcaatatgttccaa |
6693035 |
T |
|
| Q |
311 |
atgaataaagtattggcaaagcatatctggccattggattcagatgatggtatgctcctacaaccttacgcttccttcttgctattttttgttatttcaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6693034 |
atgaataaagtattggcaaagcatatctggccattggattcagatgatggtatgctcctacaaccttacacttccttcttgctattttttgttatttcaa |
6692935 |
T |
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| Q |
411 |
aataagacattggatattctt |
431 |
Q |
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| T |
6692934 |
aataagacattggatattctt |
6692914 |
T |
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