View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19641_high_4 (Length: 337)

Name: NF19641_high_4
Description: NF19641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19641_high_4
NF19641_high_4
[»] chr2 (10 HSPs)
chr2 (18-288)||(1402210-1402460)
chr2 (18-288)||(1398506-1398777)
chr2 (242-324)||(1388627-1388709)
chr2 (18-104)||(966219-966305)
chr2 (40-146)||(409121-409227)
chr2 (18-104)||(820458-820544)
chr2 (49-160)||(958457-958570)
chr2 (40-152)||(997464-997576)
chr2 (63-136)||(982246-982319)
chr2 (23-134)||(975598-975709)
[»] chr3 (1 HSPs)
chr3 (25-137)||(45811285-45811397)
[»] chr7 (2 HSPs)
chr7 (25-132)||(12094097-12094204)
chr7 (47-134)||(1446684-1446771)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 1402460 - 1402210
Alignment:
Q  18 gagaacgggaacgtaacgccaaagatgaatccatcgcttcgaaagaatggatgtggctacggcttgtttggtgggaacagaagagagtatgcgagtcaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1402460 gagaacgggaacgtaacgccaaagatgaatccatcgcttcgaaagaatggatgtggctacggcttgtttggtgggaacagaagagagtatgcgagtcaga 1402361  T
Q  118 atatcgtctggtaaacttcctaacctatccatcgctgcagttgttgttgtagttacgacagatatggtgtttggaagcaaattttaacctaaaagtgttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||    
T  1402360 atatcgtctggtaaacttcctaacctatccatcgctgcagttgttgt--------------------tgtttggaagcaaattttaacctaaaagtgttt 1402281  T
Q  218 ttaggttttgcttaaatagccaagattgggtcgggtataattttattaaatctttgtgcgtcaaatcttat 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1402280 ttaggttttgcttaaatatccaagattgggtcgggtataattttattaaatctttgtgtgtcaaatcttat 1402210  T

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Target: chr2; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 1398777 - 1398506
Alignment:
Q  18 gagaacgggaacgtaacgccaaagatgaatccatcgcttcgaaagaatggatgtggctacggcttgtttggtgggaacagaagagagtatgcgagtcaga 117  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1398777 gagaacgggaacgtaacgccaaagatgaatccattgctttgaaagaatggatgtggctacggcttgtttggtgggaacagaagagagtatgcgagtcaga 1398678  T
Q  118 atatcgtctggtaaacttcctaacctatccatcgctgc---agttgttgttgtagttacgacagatatggtgtttggaagcaaattttaacctaaaagtg 214  Q
    |||||||||||||||||||||| |||||||||||| ||      |||  || || |||||   |||   || ||||||||||||||||||||||||||||    
T  1398677 atatcgtctggtaaacttcctatcctatccatcgccgcctgctctgtatttcta-ttacgtacgatgctgt-tttggaagcaaattttaacctaaaagtg 1398580  T
Q  215 tttttaggttttgcttaaatagccaagattgggtcgggtataattttattaaatctttgtgcgtcaaatcttat 288  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  1398579 ttttaaggttttgcttaaatagccaagattgggtcgggtaaaattttattaaatctttgtgtgtcaaatcttat 1398506  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 1388709 - 1388627
Alignment:
Q  242 attgggtcgggtataattttattaaatctttgtgcgtcaaatcttatcttatatataaaaaatgtttaaatcttttaggcaat 324  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1388709 attgggtcgggtataattttattaaatctttgtgtgtcaaatcttatcttatatataaaaaatgtttaaatcttttaggcaat 1388627  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 966219 - 966305
Alignment:
Q  18 gagaacgggaacgtaacgccaaagatgaatccatcgcttcgaaagaatggatgtggctacggcttgtttggtgggaacagaagagag 104  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||    
T  966219 gagaacgggagcgtaacaccaaagatgaatccatcgctttgaaagaatggatgtggctaccgcttttttggtgggaacaaaagagag 966305  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 409227 - 409121
Alignment:
Q  40 agatgaatccatcgcttcgaaagaatggatgtggctacggcttgtttggtgggaacagaagagagtatgcgagtcagaatatcgtctggtaaacttccta 139  Q
    |||||| |||||| ||| ||||||||||||||| | | ||||||||||||||||||| ||||||| ||| || ||||||| ||||||||||||||||| |    
T  409227 agatgagtccatctctttgaaagaatggatgtgacaaaggcttgtttggtgggaacaaaagagagaatgtgaatcagaatctcgtctggtaaacttccaa 409128  T
Q  140 acctatc 146  Q
     ||||||    
T  409127 tcctatc 409121  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 820544 - 820458
Alignment:
Q  18 gagaacgggaacgtaacgccaaagatgaatccatcgcttcgaaagaatggatgtggctacggcttgtttggtgggaacagaagagag 104  Q
    |||||| ||||||||| |||| ||||||||||||||||| ||||||||||| ||| | | |||||||||||| ||||||||||||||    
T  820544 gagaacaggaacgtaaagccatagatgaatccatcgctttgaaagaatggaagtgacaaaggcttgtttggtaggaacagaagagag 820458  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 160
Target Start/End: Original strand, 958457 - 958570
Alignment:
Q  49 catcgcttcgaaagaatggatgtggctacggcttg--tttggtgggaacagaagagagtatgcgagtcagaatatcgtctggtaaacttcctaacctatc 146  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||||| ||||||| ||| || ||||||| ||||| |  |||||||| | ||||||    
T  958457 catcgctttgaaagaatggatgtggctacggcttgtttttggtgggaacaaaagagagaatgtgaatcagaatctcgtccgccaaacttccgatcctatc 958556  T
Q  147 catcgctgcagttg 160  Q
     || || |||||||    
T  958557 tatggccgcagttg 958570  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 997464 - 997576
Alignment:
Q  40 agatgaatccatcgcttcgaaagaatggatgtggctacggcttgtttggtgggaacagaagagagtatgcgagtcagaatatcgtctggtaaacttccta 139  Q
    |||| |||||||||||| ||||||||||| || || | ||||||||||||||||||| ||||||| ||| |  | || || ||||| ||||||||||| |    
T  997464 agattaatccatcgctttgaaagaatggaagttgcgaaggcttgtttggtgggaacaaaagagagaatgtggattaggatctcgtccggtaaacttccga 997563  T
Q  140 acctatccatcgc 152  Q
     ||||||||||||    
T  997564 tcctatccatcgc 997576  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 982246 - 982319
Alignment:
Q  63 aatggatgtggctacggcttgtttggtgggaacagaagagagtatgcgagtcagaatatcgtctggtaaacttc 136  Q
    |||||||||||||||||||||||| || |||||||||||||||||  ||  ||| |||||||| | ||||||||    
T  982246 aatggatgtggctacggcttgtttcgtaggaacagaagagagtatatgaaccagtatatcgtcagataaacttc 982319  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 975598 - 975709
Alignment:
Q  23 cgggaacgtaacgccaaagatgaatccatcgcttcgaaagaatggatgtggctacggcttgtttggtgggaacagaagagagtatgcgagtcagaatatc 122  Q
    |||||||  ||| |||||||||| |||||||||| ||||||||||| ||| |   ||||||||   |||||| ||||||||| |||||| |||| || ||    
T  975598 cgggaacaaaacaccaaagatgagtccatcgctttgaaagaatggaagtgacacaggcttgttcaatgggaagagaagagagaatgcgaatcaggatgtc 975697  T
Q  123 gtctggtaaact 134  Q
    ||| || |||||    
T  975698 gtcgggaaaact 975709  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 45811285 - 45811397
Alignment:
Q  25 ggaacgtaacgccaaagatgaatccatcgcttcgaaagaatggatgtggctacggcttgtttggtgggaacagaagagagtatgcgagtcagaatatcgt 124  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||  | ||||||||||||||||||  | ||||| ||| || ||||||| ||||    
T  45811285 ggaacgtaacgccaaagatgaatccatcgctttgagagaatggatgtggtgaaggcttgtttggtgggaacgaatgagagaatgtgaatcagaatctcgt 45811384  T
Q  125 ctggtaaacttcc 137  Q
    |||||||| ||||    
T  45811385 ctggtaaagttcc 45811397  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 12094204 - 12094097
Alignment:
Q  25 ggaacgtaacgccaaagatgaatccatcgcttcgaaagaatggatgtggctacggcttgtttggtgggaacagaagagagtatgcgagtcagaatatcgt 124  Q
    |||||||||| ||| |||||  |||||| ||| |||||||| || ||| | | ||||||||||||||||| |||||| || ||| || |||| |||||||    
T  12094204 ggaacgtaacaccatagatgcttccatctctttgaaagaattgaagtgacaaaggcttgtttggtgggaaaagaagacagaatgtgaatcaggatatcgt 12094105  T
Q  125 ctggtaaa 132  Q
    ||||||||    
T  12094104 ctggtaaa 12094097  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 1446684 - 1446771
Alignment:
Q  47 tccatcgcttcgaaagaatggatgtggctacggcttgtttggtgggaacagaagagagtatgcgagtcagaatatcgtctggtaaact 134  Q
    |||||| ||| ||||||||||| |||   | ||||||||||||||||| ||||||||| ||  || | || |||||||||||||||||    
T  1446684 tccatctctttgaaagaatggaagtgagaaaggcttgtttggtgggaagagaagagagaatttgaattaggatatcgtctggtaaact 1446771  T

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