View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19641_low_3 (Length: 378)

Name: NF19641_low_3
Description: NF19641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19641_low_3
NF19641_low_3
[»] scaffold0190 (1 HSPs)
scaffold0190 (169-354)||(13511-13696)
[»] chr7 (3 HSPs)
chr7 (214-352)||(24504116-24504255)
chr7 (208-352)||(12629766-12629911)
chr7 (224-272)||(1326123-1326171)
[»] chr3 (2 HSPs)
chr3 (171-353)||(19199906-19200088)
chr3 (295-359)||(53038802-53038866)
[»] chr4 (3 HSPs)
chr4 (231-350)||(8759090-8759210)
chr4 (236-353)||(373435-373552)
chr4 (258-333)||(48040721-48040796)
[»] chr1 (4 HSPs)
chr1 (295-352)||(3375218-3375275)
chr1 (257-352)||(4325065-4325160)
chr1 (208-241)||(12067931-12067964)
chr1 (208-348)||(43781910-43782051)
[»] chr5 (3 HSPs)
chr5 (208-272)||(26654383-26654447)
chr5 (208-272)||(26925968-26926032)
chr5 (229-270)||(14410771-14410812)
[»] chr8 (2 HSPs)
chr8 (208-353)||(37486348-37486489)
chr8 (208-253)||(175832-175877)
[»] chr6 (1 HSPs)
chr6 (229-270)||(32879700-32879741)


Alignment Details
Target: scaffold0190 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 169 - 354
Target Start/End: Complemental strand, 13696 - 13511
Alignment:
Q  169 agaggtctctaccagttttggcatgttgcatagactagacgtgaattaactcacacagtgttttacacttgtgtgacttaagtcacactgcgtgaattaa 268  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  13696 agaggtctctaccagttttagcatgttgcatagactagacgtgaattaactcacgcagtgttttacacttgcgtgacttaagtcacactgcgtgaattaa 13597  T
Q  269 ctaaggcatgattaacacatgcatatgttaactcacgcaggggtattttgtgcattttggttgggtgggagtaaaacttgttgggg 354  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13596 ctaagacatgattaacacatgcgtatgttaactcacgcaggggtattttgtgcattttggttgggtgggagtaaaacttgttgggg 13511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 214 - 352
Target Start/End: Original strand, 24504116 - 24504255
Alignment:
Q  214 ttaactcacacagtgttttacacttgtgtgacttaagtcacactgcgtgaattaactaaggcatgatta-acacatgcatatgttaactcacgcaggggt 312  Q
    |||||||||| ||||||||||||||| |||||||||| |||||||||||| |||| |||  ||  |||  |||||||| | |||||||||||||| ||||    
T  24504116 ttaactcacaaagtgttttacacttgcgtgacttaagccacactgcgtgagttaattaacacagaattttacacatgcgtttgttaactcacgcatgggt 24504215  T
Q  313 attttgtgcattttggttgggtgggagtaaaacttgttgg 352  Q
    ||||||  || |||||||||||||||| ||||||||||||    
T  24504216 attttgatcaatttggttgggtgggagcaaaacttgttgg 24504255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 352
Target Start/End: Original strand, 12629766 - 12629911
Alignment:
Q  208 cgtgaattaactcacacagtgttttacacttgtgtgacttaagtcacactgcgtgaattaactaaggcatga-ttaacacatgcatatgttaactcacgc 306  Q
    ||||| ||||||||| |  ||||||||||||| |||||||| ||||||||| || | |||||||| |||  | || |||||||  |  ||||||| ||||    
T  12629766 cgtgagttaactcacgcgttgttttacacttgcgtgacttaggtcacactgtgtaagttaactaacgcaaaattttacacatgtgttagttaactaacgc 12629865  T
Q  307 aggggtattttgtgcattttggttgggtgggagtaaaacttgttgg 352  Q
    || |||||||||  ||  ||| ||||||||||| ||||||||||||    
T  12629866 agaggtattttggtcagcttgattgggtgggagcaaaacttgttgg 12629911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 1326171 - 1326123
Alignment:
Q  224 cagtgttttacacttgtgtgacttaagtcacactgcgtgaattaactaa 272  Q
    |||||||||||||||| |||||||||||||| |||| | | ||||||||    
T  1326171 cagtgttttacacttgcgtgacttaagtcacgctgcttcacttaactaa 1326123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 353
Target Start/End: Original strand, 19199906 - 19200088
Alignment:
Q  171 aggtctctaccagttttggcatgttgcatagactagacgtgaattaactcacacagtgttttacacttgtgtgacttaagtcacactgcgtgaattaact 270  Q
    |||||||| | |||| |||| || |||| ||||| | ||||| ||||||||| |||||||||||||||  |||||||||||||   ||| | | ||||||    
T  19199906 aggtctctgctagttctggcttgctgcaaagactgggcgtgagttaactcacgcagtgttttacacttacgtgacttaagtcagg-tgcttcacttaact 19200004  T
Q  271 aaggcatga-ttaacacatgcatatgttaactcacgcaggggtattttgtgcattttggttgggtgggagtaaaacttgttggg 353  Q
    || |||| | || |||||||| | |||||||| || |||||||||||||  || |||||||||||||||| |||||||||||||    
T  19200005 aacgcataaatttacacatgcgtttgttaactaacacaggggtattttgatcagtttggttgggtgggagcaaaacttgttggg 19200088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 53038866 - 53038802
Alignment:
Q  295 gttaactcacgcaggggtattttgtgcattttggttgggtgggagtaaaacttgttgggggagaa 359  Q
    ||||||| || |||||||||||||  || ||||||||||||||||  ||||||||||||| ||||    
T  53038866 gttaactaacacaggggtattttggtcagtttggttgggtgggagcgaaacttgttggggaagaa 53038802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 350
Target Start/End: Complemental strand, 8759210 - 8759090
Alignment:
Q  231 ttacacttgtgtgacttaagtcacactgcgtgaattaactaaggcatga-ttaacacatgcatatgttaactcacgcaggggtattttgtgcattttggt 329  Q
    |||| ||||||||||||||| ||| |||||||| ||||||||||||  | ||| ||||||  |  ||||||||||| ||||||||||||  |||||| ||    
T  8759210 ttactcttgtgtgacttaaggcacgctgcgtgagttaactaaggcacaaattagcacatgtgttagttaactcacgaaggggtattttgatcattttagt 8759111  T
Q  330 tgggtgggagtaaaacttgtt 350  Q
    |||||||||| ||||||||||    
T  8759110 tgggtgggagcaaaacttgtt 8759090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 353
Target Start/End: Original strand, 373435 - 373552
Alignment:
Q  236 cttgtgtgacttaagtcacactgcgtgaattaactaaggcatgattaacacatgcatatgttaactcacgcaggggtattttgtgcattttggttgggtg 335  Q
    |||| |||||||||| |||||  || || |||||||||||| ||||||||  ||| |   |||||||||||||| ||||||||  |||||||||||| ||    
T  373435 cttgcgtgacttaaggcacaccacgagagttaactaaggcaggattaacaattgcgttaattaactcacgcaggagtattttggtcattttggttggatg 373534  T
Q  336 ggagtaaaacttgttggg 353  Q
    |||| |||||||||||||    
T  373535 ggagcaaaacttgttggg 373552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 48040796 - 48040721
Alignment:
Q  258 gcgtgaattaactaaggcatgattaacacatgcatatgttaactcacgcaggggtattttgtgcattttggttggg 333  Q
    |||||| |||||||||||| ||||||||| |||||  ||||||||  |||||| |||||||  |||||| ||||||    
T  48040796 gcgtgagttaactaaggcaggattaacacttgcattagttaactcttgcagggatattttggtcattttagttggg 48040721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 3375275 - 3375218
Alignment:
Q  295 gttaactcacgcaggggtattttgtgcattttggttgggtgggagtaaaacttgttgg 352  Q
    |||||||||||||| |||||||||  ||||||||||||||||||| ||||||||||||    
T  3375275 gttaactcacgcagcggtattttggtcattttggttgggtgggagcaaaacttgttgg 3375218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 352
Target Start/End: Complemental strand, 4325160 - 4325065
Alignment:
Q  257 tgcgtgaattaactaaggcatgattaacacatgcatatgttaactcacgcaggggtattttgtgcattttggttgggtgggagtaaaacttgttgg 352  Q
    ||||||| |||||||| |||||||||  || ||| |  || |||||||| | | |||||||   ||||||||||||||||||| ||||||||||||    
T  4325160 tgcgtgagttaactaaagcatgattagtacttgcgttagtcaactcacgtatgagtattttagtcattttggttgggtgggagcaaaacttgttgg 4325065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 12067931 - 12067964
Alignment:
Q  208 cgtgaattaactcacacagtgttttacacttgtg 241  Q
    ||||| ||||||||||||||||||||||||||||    
T  12067931 cgtgagttaactcacacagtgttttacacttgtg 12067964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 348
Target Start/End: Complemental strand, 43782051 - 43781910
Alignment:
Q  208 cgtgaattaactcacacagtgttttacacttgtgtgacttaagtcacactgcgtgaattaactaaggcatga-ttaacacatgcatatgttaactcacgc 306  Q
    ||||| ||||||| | ||||  ||||||||||  ||||||||||||  | |||| | ||||||||  ||| | || |||||||| | |||||||| ||||    
T  43782051 cgtgagttaactcgcgcagtagtttacacttgcatgacttaagtcatgccgcgttatttaactaacacataattttacacatgcgtttgttaactaacgc 43781952  T
Q  307 aggggtattttgtgcattttggttgggtgggagtaaaacttg 348  Q
    | | ||||||||  || |||||||||| ||||| ||||||||    
T  43781951 atgagtattttggtcagtttggttgggcgggagcaaaacttg 43781910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 26654383 - 26654447
Alignment:
Q  208 cgtgaattaactcacacagtgttttacacttgtgtgacttaagtcacactgcgtgaattaactaa 272  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||| | |||| | ||||||||    
T  26654383 cgtgagttaactcacacagtgtttttcacttgcgtgacttaagtcacgccgcgttagttaactaa 26654447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 26925968 - 26926032
Alignment:
Q  208 cgtgaattaactcacacagtgttttacacttgtgtgacttaagtcacactgcgtgaattaactaa 272  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||| | |||| | ||||||||    
T  26925968 cgtgagttaactcacacagtgtttttcacttgcgtgacttaagtcacgccgcgttagttaactaa 26926032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 14410812 - 14410771
Alignment:
Q  229 ttttacacttgtgtgacttaagtcacactgcgtgaattaact 270  Q
    |||||||| ||||||||||||||||| |||||||| ||||||    
T  14410812 ttttacacatgtgtgacttaagtcacgctgcgtgagttaact 14410771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 353
Target Start/End: Original strand, 37486348 - 37486489
Alignment:
Q  208 cgtgaattaactcacacagtgttttacacttgtgtgacttaagtcacactgcgtgaattaactaaggcatgattaacacatgcatatgttaactcacgca 307  Q
    ||||| ||||| ||| || ||||||||||| |||| ||||| |||||||   |||  |||||||| ||| ||||||||| | | |  |||||||||||||    
T  37486348 cgtgagttaacccacgcactgttttacact-gtgtaacttatgtcacac---gtgtgttaactaaagcaggattaacacttacgttagttaactcacgca 37486443  T
Q  308 ggggtattttgtgcattttggttgggtgggagtaaaacttgttggg 353  Q
    | | |||||||  ||||||| |||  |||||| |||||||||||||    
T  37486444 gtgatattttgatcattttgtttgaatgggagcaaaacttgttggg 37486489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 175832 - 175877
Alignment:
Q  208 cgtgaattaactcacacagtgttttacacttgtgtgacttaagtca 253  Q
    ||||| ||||||||| |||||||||||||||| ||| |||||||||    
T  175832 cgtgagttaactcacgcagtgttttacacttgcgtgtcttaagtca 175877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 32879700 - 32879741
Alignment:
Q  229 ttttacacttgtgtgacttaagtcacactgcgtgaattaact 270  Q
    ||||||||||| |||||||||||||| |||||||| ||||||    
T  32879700 ttttacacttgcgtgacttaagtcacgctgcgtgagttaact 32879741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University