View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19641_low_5 (Length: 320)
Name: NF19641_low_5
Description: NF19641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19641_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 5663136 - 5663432
Alignment:
| Q |
19 |
acttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacattagcttcacattctcctccatttcctgtcagttttggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5663136 |
acttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacattagcttcacattctcctccatttcctgtcagttttggt |
5663235 |
T |
|
| Q |
119 |
actcacgagccagtagttatgttctgctgccttggtttataacttcttcatctttatgttattatactactgttgttataatagttttcttctgtgctga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5663236 |
actcacgagccagtagttatgttctgctgccttggtttataacttcttcatctttctgttattatactactgttgttataatagttttcttctgtgctga |
5663335 |
T |
|
| Q |
219 |
tattgctaacatgttactataaactgcttatgagaatcatgtg-nnnnnnnncttctgtgttgactttgctattctgttataataatgatattcttc |
314 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5663336 |
tattgctaacatgttactataatctgcttatgagaatcatgtgtttttttttcttctgtgttgactttgctattctgttataataatgatattcttc |
5663432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 52131377 - 52131508
Alignment:
| Q |
21 |
ttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacat-tagcttcacattctcctccatttcctgtcagttttggta |
119 |
Q |
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| T |
52131377 |
ttcgaagcttctgtcatcggtaagaccatggtcgcttctcacaagaagtcaaaga-acatgtagcgtcacgttatcctccatttcctgtcaattt-ggta |
52131474 |
T |
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| Q |
120 |
ctcacgagccagtagttatgttctgctgccttggttta |
157 |
Q |
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| T |
52131475 |
ctcacgaga----agttatgttctgctgccttggttta |
52131508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 11649198 - 11649155
Alignment:
| Q |
19 |
acttcgaagcttctgtcaccggtaagaccatggtcgcttctcac |
62 |
Q |
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| T |
11649198 |
acttcgaagcttctgtcatcggtaagaccatggtcgcttctcac |
11649155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 22007780 - 22007875
Alignment:
| Q |
19 |
acttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaagttaaagacacat-tagcttcac----attctcctccatttcctgtca |
110 |
Q |
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||||| || ||||||||| || |||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |
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| T |
22007780 |
acttcaaaacttctgtcatcgtcaagaccatggtcgcttttcacaagaagttaaaga-acatgtagcttcacgttgattctcctccatttcctgtca |
22007875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 11649159 - 11649122
Alignment:
| Q |
120 |
ctcacgagccagtagttatgttctgctgccttggttta |
157 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
11649159 |
ctcacgagccagcagttatgttctgctgccttggttta |
11649122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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