View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19641_low_8 (Length: 240)
Name: NF19641_low_8
Description: NF19641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19641_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1028001 - 1028224
Alignment:
| Q |
1 |
tgtccaaatactgttgatatgggtagtgcttaggaaactataagcctgtgaaagagcataataataacacaaagggtctacttggattgacttgtttgag |
100 |
Q |
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| T |
1028001 |
tgtccaaacactgttgatttgggtagtgcttaggaaactataagcctgggaaagagcataataataacacaaagggtctacttggattgacttgtttgag |
1028100 |
T |
|
| Q |
101 |
tttatgtgttgcataagcatttatgagactcttggggagaacttatagacacaggcaaacagccgacaccatgtttttcataaactatttacaacttatt |
200 |
Q |
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| T |
1028101 |
tttatctgttgcataagcatttatgagactcttggggagagcttatagacacaggcaaacagccgacaacatgtttttcataaactatttacaacttatt |
1028200 |
T |
|
| Q |
201 |
tccttaagctctccacgatatctt |
224 |
Q |
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||||||||||||||| |||||||| |
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| T |
1028201 |
tccttaagctctccaggatatctt |
1028224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 6987750 - 6987791
Alignment:
| Q |
179 |
cataaactatttacaacttatttccttaagctctccacgata |
220 |
Q |
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| T |
6987750 |
cataaactattttcaacttatttccataagctctccaggata |
6987791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 2455871 - 2455830
Alignment:
| Q |
179 |
cataaactatttacaacttatttccttaagctctccacgata |
220 |
Q |
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| T |
2455871 |
cataaactattttcaacttatttccataagctctccaagata |
2455830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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