View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19642_high_15 (Length: 245)
Name: NF19642_high_15
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19642_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 6607327 - 6607142
Alignment:
| Q |
1 |
atattaagatgaaaatcgtcctaatgtaagcctc-aattcaccaactaaaataaaagccttaatacaacaatcaagtta----catacaaaatcacacca |
95 |
Q |
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| T |
6607327 |
atattaagataaaaatcgtcctaatgtaagcctctaacacaccaaccaaaataaaagccttaatacaacaatcaagttaattacatacaaaatcaaacca |
6607228 |
T |
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| Q |
96 |
ccgatctccataggatattaggcatttgcagcaatgatgaaagcaatggtagcatgtcaaaatctgtcgcaagcatcaaaataata |
181 |
Q |
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| T |
6607227 |
ccgatctccttaggatattaagcatttgcagcaatgatgaaagaaatagtagcatgccaaaatctgttccaagcatcaaaataata |
6607142 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 11388941 - 11389015
Alignment:
| Q |
117 |
gcatttgcagcaatgatgaaagcaatggtagcatgtcaaaatctgtcgcaagcatcaaaataatagatcacaaaa |
191 |
Q |
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|||||||||||||||||||||| || |||||||| |||||| | || |||||||||| ||||||||||||||| |
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| T |
11388941 |
gcatttgcagcaatgatgaaagaaacagtagcatgccaaaatttatcataagcatcaaattaatagatcacaaaa |
11389015 |
T |
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