View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19642_high_2 (Length: 858)

Name: NF19642_high_2
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19642_high_2
NF19642_high_2
[»] chr3 (2 HSPs)
chr3 (16-391)||(45446850-45447225)
chr3 (437-637)||(45446636-45446853)
[»] chr7 (3 HSPs)
chr7 (638-717)||(37162797-37162876)
chr7 (637-716)||(12633031-12633110)
chr7 (642-716)||(12632483-12632557)
[»] chr5 (6 HSPs)
chr5 (642-717)||(17511924-17511999)
chr5 (642-716)||(17515547-17515621)
chr5 (642-706)||(21044609-21044673)
chr5 (652-717)||(21045082-21045147)
chr5 (643-714)||(8705755-8705826)
chr5 (782-847)||(17512062-17512127)
[»] chr2 (2 HSPs)
chr2 (642-717)||(8151560-8151631)
chr2 (782-847)||(8151698-8151763)
[»] chr6 (3 HSPs)
chr6 (652-717)||(12142954-12143019)
chr6 (652-717)||(12142109-12142174)
chr6 (663-706)||(12143531-12143574)
[»] scaffold0133 (1 HSPs)
scaffold0133 (642-717)||(10034-10109)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 45447225 - 45446850
Alignment:
Q  16 agttttttgattgagaaaaaggggtggtactaagagtggttggagggggttgagaattgagggatgggattgcatgagaaggtagtggagatgttaatgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45447225 agttttttgattgagaaaaaggggtggtactaagagtggttggagggggttgagaattgagggaagggattgcatgagaaggtagtggagatgttaatgt 45447126  T
Q  116 tacagcaatggctagagagaagagatttggtaggaacttttgtttattatcagaattgagtttgggaatggtgttagtgtgagtttgaggaagaggatgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45447125 tacagcaatggctagagagaagagatttggtaggaacttttgtttattatcagaattgagtttgggaatggtgttagtgtgagtttgaggaagaggatgg 45447026  T
Q  216 agaagacgaagtatcaaactcatgatttttatggagtcttctatccactcactgcatcatgtttttgctccattctttttcagccataggtgacgattgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45447025 agaagacgaagtatcaaactcatgatttttatggagtcttctatccactcactgcatcatgtttttgctccattctttttcagccataggtgacgattgt 45446926  T
Q  316 tctgttgaaatgttgatcctttctgaaaggctgttattgtccaccacataacaaaagaaaaatataatgtataagg 391  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45446925 tctgttgaaatgttgatcctttctgaaaggctgttattgttcaccacataacaaaagaaaaatataatgtataagg 45446850  T

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Target: chr3; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 437 - 637
Target Start/End: Complemental strand, 45446853 - 45446636
Alignment:
Q  437 aaggtctaggatttgtcaaaacaatgtaattagaaagagagatcttaataaagatggttaattaagttcttccacgaaaactaaagactatgactccaat 536  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45446853 aaggtctaggatttgtcaaaacaatgtagttagaaagagagatcttaataaagatggttaattaagttcttccacgaaaattaaagactatgactccaat 45446754  T
Q  537 agtataattacaaaagt----------aattgtcat-------tttgattaaaataaaatgtagttgatggtatccataaatttcaaaacaaacacttat 619  Q
    |||||||||||||||||          |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45446753 agtataattacaaaagtgaaagatctcaattgtcattttttagtttgattaaaataaaatgtagttgatggtatccataaatttcaaaacaaacacttat 45446654  T
Q  620 aagagctttgctatatac 637  Q
    ||||||||| ||||||||    
T  45446653 aagagctttcctatatac 45446636  T

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Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 638 - 717
Target Start/End: Original strand, 37162797 - 37162876
Alignment:
Q  638 ggactgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  37162797 ggactgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccatgtattgcttcttttt 37162876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 637 - 716
Target Start/End: Complemental strand, 12633110 - 12633031
Alignment:
Q  637 cggactgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 716  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12633110 cggattgcacttacgtaacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacatgttgcttctttt 12633031  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 642 - 716
Target Start/End: Original strand, 12632483 - 12632557
Alignment:
Q  642 tgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 716  Q
    ||||||| | |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  12632483 tgcacttccgtaacattgtggcgggctatgtcacatgacatagcaaataaaattgtgccacgtgttgcttctttt 12632557  T

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Target: chr5 (Bit Score: 64; Significance: 2e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 642 - 717
Target Start/End: Original strand, 17511924 - 17511999
Alignment:
Q  642 tgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 717  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  17511924 tgcacttacgtaacattgtggcgggctatgtcacatggcatagccagtaaaattgtgccacatgttgcttcttttt 17511999  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 642 - 716
Target Start/End: Complemental strand, 17515621 - 17515547
Alignment:
Q  642 tgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 716  Q
    ||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  17515621 tgcacttccgtaacattgtggcgggctatgtcacatgacatagcaagtaaaattgtgccacatgttgcttctttt 17515547  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 642 - 706
Target Start/End: Original strand, 21044609 - 21044673
Alignment:
Q  642 tgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgt 706  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  21044609 tgcacttccgtaacattgtggcgggctatgtcacatgacatagctagtaatattgcgccacgtgt 21044673  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 652 - 717
Target Start/End: Complemental strand, 21045147 - 21045082
Alignment:
Q  652 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 717  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||| ||||  |||||||||    
T  21045147 taacattgtggcgggctatgtcacatgacatagccagtaacatttcgccatgtgtcacttcttttt 21045082  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 643 - 714
Target Start/End: Original strand, 8705755 - 8705826
Alignment:
Q  643 gcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctt 714  Q
    |||||||  |||||||  |||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||    
T  8705755 gcacttatgtaacattccggcgggctatctcacatgacatagcgagtaatattgtaccacgtgttgcttctt 8705826  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 782 - 847
Target Start/End: Original strand, 17512062 - 17512127
Alignment:
Q  782 cttcttctccttcaaaacgtgttatgttttccctcacttctcccttgcttcacttctccctatgct 847  Q
    |||||||||||| |||||| |||  |  ||||||||||||||||||||||||||||||||| ||||    
T  17512062 cttcttctcctttaaaacgcgttcggcgttccctcacttctcccttgcttcacttctccctgtgct 17512127  T

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Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 642 - 717
Target Start/End: Original strand, 8151560 - 8151631
Alignment:
Q  642 tgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 717  Q
    ||||||||| |||||||||||||||||||||||||||||||    ||||| |||||||||||||||||||||||||    
T  8151560 tgcacttacgtaacattgtggcgggctatgtcacatgacat----agtaagattgtgccacgtgttgcttcttttt 8151631  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 782 - 847
Target Start/End: Original strand, 8151698 - 8151763
Alignment:
Q  782 cttcttctccttcaaaacgtgttatgttttccctcacttctcccttgcttcacttctccctatgct 847  Q
    ||||||||||||||||||| |||  |  |||||||| |||||||||||||||||||||||| ||||    
T  8151698 cttcttctccttcaaaacgcgttcggcgttccctcatttctcccttgcttcacttctccctgtgct 8151763  T

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Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 652 - 717
Target Start/End: Original strand, 12142954 - 12143019
Alignment:
Q  652 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 717  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||  |||||||||    
T  12142954 taacatagtggcgggctatgttacatgacatagccagtaatattgtgccacgtgtcacttcttttt 12143019  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 652 - 717
Target Start/End: Original strand, 12142109 - 12142174
Alignment:
Q  652 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 717  Q
    |||||| |||||||||||||| |||||||||||||||||| |||||||||| |||  |||||||||    
T  12142109 taacatagtggcgggctatgttacatgacatagccagtaatattgtgccacatgtcacttcttttt 12142174  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 663 - 706
Target Start/End: Complemental strand, 12143574 - 12143531
Alignment:
Q  663 cgggctatgtcacatgacatagccagtaaaattgtgccacgtgt 706  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  12143574 cgggctatgtcacatgacatagccaataatattgtgccacgtgt 12143531  T

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Target: scaffold0133 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 642 - 717
Target Start/End: Complemental strand, 10109 - 10034
Alignment:
Q  642 tgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 717  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||  ||| ||||  |||||||||    
T  10109 tgcacttccgtaacattgtggtgggctatgtcacatgacatagccagtaatattgcaccatgtgtcacttcttttt 10034  T

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