View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19642_high_21 (Length: 209)
Name: NF19642_high_21
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19642_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 14611402 - 14611576
Alignment:
| Q |
18 |
atagaacatatacataatgcatttaaataaaacaatataaatttcttgctaactttcctattttattaattatctaaagttacataattttattagatct |
117 |
Q |
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| T |
14611402 |
atagaacatatacataatgcatttaaataaaacaatataaatttcttgctaactttcctattttattaattatctaaagttacataattttattagatct |
14611501 |
T |
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| Q |
118 |
tattaaagatacatcatattacatgtaggtacgaagagaagacagaatggggagacagagtgggatggatttatg |
192 |
Q |
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| T |
14611502 |
tattaaagatacatcatattacatgtaggtacgaagagaagacagaatggggagacagagtgggatggatttatg |
14611576 |
T |
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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 14597052 - 14596994
Alignment:
| Q |
134 |
tattacatgtaggtacgaagagaagacagaatggggagacagagtgggatggatttatg |
192 |
Q |
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| T |
14597052 |
tatttcatgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatg |
14596994 |
T |
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