View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19642_low_1 (Length: 1035)
Name: NF19642_low_1
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19642_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Complemental strand, 4223675 - 4223192
Alignment:
| Q |
13 |
attattctcacaaatttgaagattgtgtgtgaatcatattgtt-aattaacatcacttttgattttccttttttgttgtggtttaaggtgatattgacta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4223675 |
attattctcacaaatttgaagattgtgtgtgaatcatagtgtttaattaatatcacttttgattttccttttatgttgtggtttaaggtgatattgacta |
4223576 |
T |
|
| Q |
112 |
gattattcttatattaattaaaaagaaggaataaatagtatgataatagaaatgggatagggtttgcggtt--tggtggacatatatgaagctaaaaaag |
209 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
4223575 |
gatttttcttatattaattaaaaagaaggaataaatagtattataatagaaatgggatagggttttcggttgatggtggacatatatgaagctaaaaaag |
4223476 |
T |
|
| Q |
210 |
cttagtggtaattgattgtg-ttgtggttgaattctaatttgcttcctaaatatggtcatgctgtaatgtgaactagcacataaaaagtgcagctaaaat |
308 |
Q |
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| T |
4223475 |
cttagtggtaattgattgtaattgtggttgaattctaatttgcttcctaaatatggtcatgctgtaatgtgaactagtacataaaaagtgcagctaaaat |
4223376 |
T |
|
| Q |
309 |
tttgagtggaataaccaattgtaatgaaattgacataaaaaatttgatgagccttttagattatatttggtag-----ttataacataattgaggtttat |
403 |
Q |
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| T |
4223375 |
tttgagtggaataaccaattgtaatgaaatttacataaaaaatttcatgagccttttagtttgtatttggtagttaatttataacataattgaggtttat |
4223276 |
T |
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| Q |
404 |
ctgagcccttagctttgcagttgtaaccgcaaaagttttgagaaaagaaacaaatatataagaaaaaagaagattaaatgttgaata |
490 |
Q |
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| T |
4223275 |
ctgaggccttagctttgctattttaaccgcaaaagttttgag-gaagaaacaaatatattaggaaaa--aagattaaatgttaaata |
4223192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 506 - 688
Target Start/End: Complemental strand, 4223146 - 4222953
Alignment:
| Q |
506 |
aagaaatgttgaatatgttaaagcacaaagatagttagaaattacaaaataatttcggtcatttttagttcttcaag----------agggtttaggaat |
595 |
Q |
| |
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||||||||||||||||||||||||| | | | |||||||||||||||||||||| ||||||||||||||||| | | ||| ||||||||| |
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| T |
4223146 |
aagaaatgttgaatatgttaaagcatgacggtggttagaaattacaaaataatttaggtcatttttagttcttaaggcgttttatggaggatttaggaat |
4223047 |
T |
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| Q |
596 |
ttttcttcatgtt-aaaagtaatttcatttgtgtggctagatgaatatggttactgtgaaaagttttaagattgtgctaaacaagattgatcaa |
688 |
Q |
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| T |
4223046 |
ttttcttcaagttgaaaagtaatttcatttgtgttgcaggatgaatatggttaccgtgaaaagttttaagattgtgctaaccaagattgatcaa |
4222953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 709 - 821
Target Start/End: Complemental strand, 4222913 - 4222801
Alignment:
| Q |
709 |
acattttataaaccagaacgttgataaatcaaatatctgtttgactaaataaaccaatatttgtattaaccggatcgttactgcaatattcaacattcat |
808 |
Q |
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||||||| |||||||||| ||||||||| ||||||| | |||||||||||||||||||||| ||| |||||||| |||||| ||||||||| ||||||| |
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| T |
4222913 |
acattttctaaaccagaatgttgataaaccaaatattttcttgactaaataaaccaatatttatataaaccggatggttactacaatattcagcattcat |
4222814 |
T |
|
| Q |
809 |
aaatgattcatca |
821 |
Q |
| |
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|||||||| |||| |
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| T |
4222813 |
aaatgatttatca |
4222801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 896 - 1012
Target Start/End: Complemental strand, 4222720 - 4222600
Alignment:
| Q |
896 |
ttgaccgcaatagagggacgggttaacaatgattttgatgaattgtcccttagttggatttatgtctagatgatattga------agttctcatcatccg |
989 |
Q |
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||||| |||||||||||||| |||||||||| ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||||||||| | |
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| T |
4222720 |
ttgactgcaatagagggacgagttaacaatg-ttttgttga-ttgtcccttagttggatctatatctagatgctattgaagttggagttctcatcatatg |
4222623 |
T |
|
| Q |
990 |
caccattaaagaatgctcattgt |
1012 |
Q |
| |
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|| ||||||||||||||| |||| |
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| T |
4222622 |
caacattaaagaatgctcgttgt |
4222600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 372 - 662
Target Start/End: Original strand, 43002701 - 43002996
Alignment:
| Q |
372 |
tatttggtagttataacataattgaggtttatctgagcccttagctttgcagttgtaaccgcaaaagttttgagaaaagaaacaaatatataag--aaaa |
469 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |
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| T |
43002701 |
tatttgctagttataacataattgaggcttatctgagcctttagctttgcagttgtaaccgcaaaagtattgag-gaagaaacaaatatataaggaaaaa |
43002799 |
T |
|
| Q |
470 |
aagaagattaaatgttgaatannnnnnnnnncttacaagaaatgttgaatatgttaaagcacaaagatagttagaaattacaaaataatttcggtcattt |
569 |
Q |
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||||||||| || ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| |
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| T |
43002800 |
aagaagattgaaggttgaat---ttttttttcttacaagaaatgttgaatatgttaaagcacgaaggtagttagaaattacaaaataatttcagtcattt |
43002896 |
T |
|
| Q |
570 |
ttagttcttca-------agagggtttaggaatttttcttcatgttaaaagtaatttcatttgtgtggctagatgaatatggttactgtgaaaagtttta |
662 |
Q |
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||||||||| | |||| ||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||| |
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| T |
43002897 |
ttagttcttaaggcgtttggaggaattaggaatttttcttcatgatgaaagtaatttcatttgtgttgctggatgaatattgttaccgtgaaaagtttta |
43002996 |
T |
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