View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19642_low_11 (Length: 303)
Name: NF19642_low_11
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19642_low_11 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
| [»] scaffold1033 (2 HSPs) |
| | |
|
| [»] scaffold1029 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 303
Target Start/End: Complemental strand, 28569239 - 28568941
Alignment:
| Q |
5 |
acgtggcttcttgacctttactacttgcacgatcgactaaacatattatattacatttggccgttcaatatatataagcaataattaattaaggttgatc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
28569239 |
acgtggcttcttgacctttactacttgcacgatcgactaaacatattatattacatttggacgttcaatatatataagcaataa---attaagattgatc |
28569143 |
T |
|
| Q |
105 |
taaagttcctcacataataaacatggaatataagaaacatgttcttcctttaaattaatcgttgttatttaat----gttaaatagtcatgaatagacaa |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28569142 |
taaagttcctcacaaaataaacatggaatataagaaacatgttct-cctttaaattaatcgttgttatttaattaatgttaaatagtcatgaatagacaa |
28569044 |
T |
|
| Q |
201 |
cagcacatcatcaacatactataacaagcattgccaaactataactaataaaataatgtgttacaatacacatatgcagcatactataacaagcattgga |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28569043 |
cagcacatcagcaacatactataacaagcattgcccaactataactaataaaataatatgttacaatacacatatgcagcatactataacaagcattgga |
28568944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 28568869 - 28568797
Alignment:
| Q |
212 |
caacatactataacaagcattgccaaactataactaataaaataatgtgttacaatacacatatgcagcatac |
284 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
28568869 |
caacatactataacaagcattggcaaactataactaataaattaatgtcttacaatacacatatgcagcatac |
28568797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 28568902 - 28568847
Alignment:
| Q |
244 |
actaataaaataatgtgttacaatacacatatgcagcatactataacaagcattgg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28568902 |
actaataaaataatgtgttacaatacacatatgcaacatactataacaagcattgg |
28568847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 28568964 - 28568913
Alignment:
| Q |
215 |
catactataacaagcattgccaaactataactaataaaataatgtgttacaa |
266 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
28568964 |
catactataacaagcattggaaaactataactaataaattaatgtcttacaa |
28568913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 28580819 - 28580750
Alignment:
| Q |
131 |
aatataagaaacatgttcttcctttaaattaatcgttgttatttaatgttaaatagtcatgaatagacaaca |
202 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||| | || | |||||||||||||||||| |
|
|
| T |
28580819 |
aatataagaaacatgttc-tcctttaaattaattattgttatttagag-tagaaagtcatgaatagacaaca |
28580750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 28586980 - 28586869
Alignment:
| Q |
131 |
aatataagaaacatgttcttcctttaaattaatcgttgttatttaatgttaaatagtcatgaatagacaacagcacatcatcaacatactataacaagca |
230 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||||| ||| |||| || ||||||||| ||||||||||| ||| ||||||| | ||||| || |
|
|
| T |
28586980 |
aatataagaaacttgtt----ctttaaattaatttttgttacttagtgttgaaaagtcatgaacagacaacagcaagtcagcaacataattaaacaaaca |
28586885 |
T |
|
| Q |
231 |
ttgccaaactataact |
246 |
Q |
| |
|
||| ||||||| |||| |
|
|
| T |
28586884 |
ttggcaaactaaaact |
28586869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 2672 - 2800
Alignment:
| Q |
84 |
aataattaattaaggttgatctaaagttcctcacataataaacatggaatataagaaacatgttcttcctttaaattaatcgttgttatttaatgttaaa |
183 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2672 |
aataattaattaagatcgatctaaagttcctcacgaaataaaca---------agaaacatgttctt----taaattaatcgttgttatttaatgttaaa |
2758 |
T |
|
| Q |
184 |
tagtcatgaatagacaacagcacatcatcaacatactataac |
225 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
2759 |
tagtcatgaatagaaaacagcacatcaacaacatactataac |
2800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 2869 - 2909
Alignment:
| Q |
244 |
actaataaaataatgtgttacaatacacatatgcagcatac |
284 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2869 |
actaataaattaatgtgttacaatacacatatgcagcatac |
2909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 2672 - 2800
Alignment:
| Q |
84 |
aataattaattaaggttgatctaaagttcctcacataataaacatggaatataagaaacatgttcttcctttaaattaatcgttgttatttaatgttaaa |
183 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2672 |
aataattaattaagatcgatctaaagttcctcacgaaataaaca---------agaaacatgttctt----taaattaatcgttgttatttaatgttaaa |
2758 |
T |
|
| Q |
184 |
tagtcatgaatagacaacagcacatcatcaacatactataac |
225 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
2759 |
tagtcatgaatagaaaacagcacatcaacaacatactataac |
2800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 2869 - 2909
Alignment:
| Q |
244 |
actaataaaataatgtgttacaatacacatatgcagcatac |
284 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2869 |
actaataaattaatgtgttacaatacacatatgcagcatac |
2909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University