View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19642_low_12 (Length: 290)
Name: NF19642_low_12
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19642_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 31411260 - 31410989
Alignment:
| Q |
1 |
ttagaaagaaagtttaggtcatttgcaatataaaataccgtaaaatatcttcttagatggttttggtatgcattgagatgacttgtacaagcagcaaagc |
100 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31411260 |
ttagaaagaaaatttgggtcatttgcaatataaaataccgtaaaatatcttctgagatggttttggtatgcattgagatgacttgtacaagcagcaaagc |
31411161 |
T |
|
| Q |
101 |
actaaagaatagtaaactagaaggaataggatattcaaatattgaaaggtaaagtgagaccaatgaaaatcagaggacaaactattaagagatatgtaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31411160 |
actaaagaatagtaaactagaaggaataggatattcaaatattgaaaggtaaagtgagaccaatgaaaatcagaggacaaactattaagatatatgtaga |
31411061 |
T |
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| Q |
201 |
ggaaagtgatattttttaacctaattatagtgtcaacgtgtgttgatttatctatttctttgaatgtggcaaa |
273 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31411060 |
ggaaagtgatat-ttttaacctaattatagtgtcaacgtgtgttgatttatctatttctttgaatgtggcaaa |
31410989 |
T |
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