View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19642_low_14 (Length: 250)
Name: NF19642_low_14
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19642_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 43178758 - 43178522
Alignment:
| Q |
1 |
aattacaatgttattatgttaattgttatattagtttattctcattgttaattctagacctcaaactccttaactcttaactcaaacccgctgaaaaatc |
100 |
Q |
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| T |
43178758 |
aattacaatgttattatgttaattgttatattagtttattctcgttgtttattctagacctcaaactccttaactcttaactcaaatccgccgaaaaatc |
43178659 |
T |
|
| Q |
101 |
ttagtaactaacaaatgcaagttaaccaagccctttcaaaatgcttaggaagagaatatcgtttactgatgcaggtccaaaagacatttcttggctcatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43178658 |
ttagtaactaacaaatgcaagttaaccaagccctttctaaatgcttaggaagagaatatcgtttactgatgcaggtccaaaagacatttcttgggtcatc |
43178559 |
T |
|
| Q |
201 |
atcatgtcctttggaggccccaattcagcatcaacct |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
43178558 |
atcatgtcctttggaggccccaattcagcatcaacct |
43178522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 12764382 - 12764354
Alignment:
| Q |
7 |
aatgttattatgttaattgttatattagt |
35 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
12764382 |
aatgttattatgttaattgttatattagt |
12764354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 37379294 - 37379327
Alignment:
| Q |
10 |
gttattatgttaattgttatattagtttattctc |
43 |
Q |
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| T |
37379294 |
gttattatgttaattgttatattagttttttctc |
37379327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 41513020 - 41512980
Alignment:
| Q |
8 |
atgttattatgttaattgttatattagtttattctcattgt |
48 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||| ||||| |
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| T |
41513020 |
atgttattatattaattgttatgttagtttattcttattgt |
41512980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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