View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19642_low_17 (Length: 229)

Name: NF19642_low_17
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19642_low_17
NF19642_low_17
[»] chr3 (4 HSPs)
chr3 (18-211)||(51847544-51847737)
chr3 (25-96)||(3797390-3797461)
chr3 (18-88)||(53283137-53283207)
chr3 (20-65)||(31892977-31893022)
[»] chr4 (7 HSPs)
chr4 (18-209)||(26888535-26888727)
chr4 (18-66)||(17055625-17055673)
chr4 (30-86)||(37794113-37794169)
chr4 (22-69)||(43389288-43389335)
chr4 (27-69)||(21348693-21348735)
chr4 (22-86)||(17061879-17061943)
chr4 (22-69)||(33073766-33073814)
[»] chr7 (4 HSPs)
chr7 (22-102)||(45624725-45624805)
chr7 (18-66)||(30785894-30785942)
chr7 (18-65)||(37309243-37309290)
chr7 (25-69)||(45630728-45630772)
[»] chr1 (1 HSPs)
chr1 (22-102)||(48225680-48225760)
[»] chr6 (1 HSPs)
chr6 (18-88)||(938583-938653)
[»] chr8 (1 HSPs)
chr8 (19-88)||(1878401-1878470)
[»] chr2 (1 HSPs)
chr2 (25-69)||(38610947-38610991)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 51847544 - 51847737
Alignment:
Q  18 ttcttgcctttcaattccgatcaaaactacgtaaaaatcattgaatttcattaggtacgaagggagatccggttgggtcatttcgtacgtcaaaacaatc 117  Q
    ||||| |||||||| |||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| | |||||||||| |    
T  51847544 ttcttacctttcaaatccgattaaaactacgtaaaaatcattgaatttcatcagatacaaagggagatccggttgggtcatttcgcaggtcaaaacaacc 51847643  T
Q  118 cgtttcagacaacacgggtgaagaagatgaaaaaatttgctaagaaattttttgcaatatctagcatggcaagagttgaactcacgacctcctt 211  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||    
T  51847644 tgtttcagacaacacgggcgaagaagatgaaaaaatttgctaagaaaaaatttacaatatctagcatggcaagagttgaactcacgacctcctt 51847737  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 3797461 - 3797390
Alignment:
Q  25 ctttcaattccgatcaaaactacgtaaaaatcattgaatttcattaggtacgaagggagatccggttgggtc 96  Q
    |||||||| |||||||||||||| |||||||||||||||||||||  |||| |||||||||||||| |||||    
T  3797461 ctttcaataccgatcaaaactacataaaaatcattgaatttcattgtgtactaagggagatccggtcgggtc 3797390  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 53283137 - 53283207
Alignment:
Q  18 ttcttgcctttcaattccgatcaaaactacgtaaaaatcattgaatttcattaggtacgaagggagatccg 88  Q
    |||||| |||||||||||||||| |||||  |||||||| ||||||||||||  |||  ||||||||||||    
T  53283137 ttcttgactttcaattccgatcagaactagttaaaaatcgttgaatttcattgtgtataaagggagatccg 53283207  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 31893022 - 31892977
Alignment:
Q  20 cttgcctttcaattccgatcaaaactacgtaaaaatcattgaattt 65  Q
    |||||| ||||| |||||||||||| ||||||||||| ||||||||    
T  31893022 cttgccattcaaatccgatcaaaacaacgtaaaaatcgttgaattt 31892977  T

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Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 26888727 - 26888535
Alignment:
Q  18 ttcttgcctttcaattccgatcaaaactacgtaaaaa-tcattgaatttcattaggtacgaagggagatccggttgggtcatttcgtacgtcaaaacaat 116  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||| |||| |||||| ||||||||||||||||||||||||||    |||||||||     
T  26888727 ttcttgcctttcaattccgattaaaaccacgtaaaaaatcattgaatgtcatcaggtacaaagggagatccggttgggtcatttcgcggatcaaaacaac 26888628  T
Q  117 ccgtttcagacaacacgggtgaagaagatgaaaaaatttgctaagaaattttttgcaatatctagcatggcaagagttgaactcacgacctcc 209  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  26888627 ccgtttcagacaacacgggcgaagaagatgaaaaaatttgctaagaaattttttacaatatctagcatggcaagagttgaactcacaacctcc 26888535  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 17055625 - 17055673
Alignment:
Q  18 ttcttgcctttcaattccgatcaaaactacgtaaaaatcattgaatttc 66  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  17055625 ttcttgcctttcaattccgatcaatactacgtaaaaatcgttgaatttc 17055673  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 37794113 - 37794169
Alignment:
Q  30 aattccgatcaaaactacgtaaaaatcattgaatttcattaggtacgaagggagatc 86  Q
    ||||||||||||||||||||||||||| ||| ||||||||  |||  ||||||||||    
T  37794113 aattccgatcaaaactacgtaaaaatcgttgcatttcattgcgtagaaagggagatc 37794169  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 43389288 - 43389335
Alignment:
Q  22 tgcctttcaattccgatcaaaactacgtaaaaatcattgaatttcatt 69  Q
    |||| ||||||||||||||||||| | |||||||| ||||||||||||    
T  43389288 tgccattcaattccgatcaaaactccataaaaatcgttgaatttcatt 43389335  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 21348693 - 21348735
Alignment:
Q  27 ttcaattccgatcaaaactacgtaaaaatcattgaatttcatt 69  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||    
T  21348693 ttcaaatcctatcaaaactacgtaaaaatcgttgaatttcatt 21348735  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 17061943 - 17061879
Alignment:
Q  22 tgcctttcaattccgatcaaaactacgtaaaaatcattgaatttcattaggtacgaagggagatc 86  Q
    |||||||||||| |  |||||||||||||||| || ||||||||||||  |||| || |||||||    
T  17061943 tgcctttcaatttcagtcaaaactacgtaaaattcgttgaatttcattgtgtaccaaaggagatc 17061879  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 33073766 - 33073814
Alignment:
Q  22 tgcctttcaattccgatcaaaactacg-taaaaatcattgaatttcatt 69  Q
    ||||||||||||||||||||||||| |  ||||||| ||||||||||||    
T  33073766 tgcctttcaattccgatcaaaactatgaaaaaaatcgttgaatttcatt 33073814  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 45624725 - 45624805
Alignment:
Q  22 tgcctttcaattccgatcaaaactacgtaaaaatcattgaatttcattaggtacgaagggagatccggttgggtcatttcg 102  Q
    |||| ||||||||||||||||||| |||||||||  ||||||||||||  |||| |||||||||||||| ||||| |||||    
T  45624725 tgccattcaattccgatcaaaactgcgtaaaaatagttgaatttcattgtgtaccaagggagatccggtcgggtcgtttcg 45624805  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 30785942 - 30785894
Alignment:
Q  18 ttcttgcctttcaattccgatcaaaactacgtaaaaatcattgaatttc 66  Q
    ||||||||||||||||| |||||| |||||||||||||| |||||||||    
T  30785942 ttcttgcctttcaattctgatcaatactacgtaaaaatcgttgaatttc 30785894  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 37309243 - 37309290
Alignment:
Q  18 ttcttgcctttcaattccgatcaaaactacgtaaaaatcattgaattt 65  Q
    |||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  37309243 ttcttgcctttcaatttcgatcaaaacaacgtaaaaatcgttgaattt 37309290  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 45630772 - 45630728
Alignment:
Q  25 ctttcaattccgatcaaaactacgtaaaaatcattgaatttcatt 69  Q
    ||||||||||| ||||| |||||| ||||||| ||||||||||||    
T  45630772 ctttcaattccaatcaatactacgaaaaaatcgttgaatttcatt 45630728  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 48225760 - 48225680
Alignment:
Q  22 tgcctttcaattccgatcaaaactacgtaaaaatcattgaatttcattaggtacgaagggagatccggttgggtcatttcg 102  Q
    |||| ||||||||||||||||||| |||||||||  ||||||||||||  |||| |||||||||||||| ||||| |||||    
T  48225760 tgccattcaattccgatcaaaactgcgtaaaaatagttgaatttcattgtgtaccaagggagatccggtcgggtcgtttcg 48225680  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 938583 - 938653
Alignment:
Q  18 ttcttgcctttcaattccgatcaaaactacgtaaaaatcattgaatttcattaggtacgaagggagatccg 88  Q
    |||||| |||||||||||||||| ||   |||||||||| ||||||||||||| |||  ||||||||||||    
T  938583 ttcttgactttcaattccgatcagaataccgtaaaaatcgttgaatttcattatgtataaagggagatccg 938653  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 1878470 - 1878401
Alignment:
Q  19 tcttgcctttcaattccgatcaaaactacgtaaaaatcattgaatttcattaggtacgaagggagatccg 88  Q
    ||||||| || |||||||| ||||| || ||||||||| ||| ||||||||| |||  ||||||||||||    
T  1878470 tcttgccatttaattccgaacaaaaatatgtaaaaatcgttgcatttcattacgtagaaagggagatccg 1878401  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 38610947 - 38610991
Alignment:
Q  25 ctttcaattccgatcaaaactacgtaaaaatcattgaatttcatt 69  Q
    ||||| |||||||| ||||||||||||||||| |||| |||||||    
T  38610947 ctttcgattccgatgaaaactacgtaaaaatcgttgagtttcatt 38610991  T

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