View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19642_low_4 (Length: 555)
Name: NF19642_low_4
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19642_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Complemental strand, 48166320 - 48165777
Alignment:
| Q |
1 |
ttgttcaaatgcaacagcaacaagagctgctactccacaaatggctctctcagtatcattgctcattgtgtcatacaaattatctctcagattcaatatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48166320 |
ttgttcaaatgcaacagcaacaagagctgctactccacaaatggctctctcagtatcattgctcattgtgtcatataaattatctctcagattcaatatt |
48166221 |
T |
|
| Q |
101 |
gcacttgtacaatccgcacacgactcatcaaacgaaaggtcgaagtggctgcattggttcaatgcatctgagtacttttgcaagccttgaacagttagca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48166220 |
gcacttgtacaatccgcacacgactcatcaaacgaaaggtcgaagtggctgcattggttcaatgcatctgagtacttttgcgagccttgaacagttagca |
48166121 |
T |
|
| Q |
201 |
aagataaattggagcattgagagctaccaaagtaaaagttatcaaagccacatgaagacagtgacatccctggttgtggatgaaatgattggttgcaact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48166120 |
aagataaattggagcattgagagctaccaaagtaaaagttatcaaagccacatgaagacagtgacatccctggttgtggatgaaatgattggttgcaact |
48166021 |
T |
|
| Q |
301 |
ttgccattgttcttgagaaaggaacatttgtccttttgtgttacggacttgtgaggccatggcatctgacaaaatggtcagagcatttctgcagcagaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48166020 |
ttgccattgttcttgagaaaggaacatttgtccttttgtgttacggacttgtgaggccatggcatctgacaaaatggtcagagcatttctgcagcagaga |
48165921 |
T |
|
| Q |
401 |
gtagttgggaaaccatcactgccactgccccatttggttatatcctcttttgcacccccacattcaccaaaaggcatatattcattttggtatgcattga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48165920 |
gtagttgggaaaccatcactgccactgccccatttggttatatcctcttttgcacccccacattcaccaaaaggcatatattcattttggtatgcattga |
48165821 |
T |
|
| Q |
501 |
aatccaataaacatgtacctgcaccaaatggaaagagttatata |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48165820 |
aatccaataaacatgtacctgcaccaaatggaaagagttatata |
48165777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University