View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19642_low_6 (Length: 497)
Name: NF19642_low_6
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19642_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 8855862 - 8856143
Alignment:
| Q |
7 |
aacttgagagtcaataaccatatgctaagaatatctcagaccttataataatataaaaggattatccattcgacgcatataacaaccgtgctccaaaatc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8855862 |
aacttgagagtcaataaccatatgctaagaatatctcagaccttataataatataaaaggattatccattcgacgcatataacaaccgtgctccaaaatc |
8855961 |
T |
|
| Q |
107 |
atgtgatgggagggataggaaaatctttaaattagttttcattaaagccatcaaacagtatgatcttttatcctatattttatggtagctgttgcgtaaa |
206 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||| |||| |
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| T |
8855962 |
atgtgatgggagggataggtaaatctttaaattagttttcatgaaag-catcaaacagtatgatcttttaccctatattttatggtagctattgcataaa |
8856060 |
T |
|
| Q |
207 |
caagggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaaaaatactagtttggt |
289 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8856061 |
caaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaatcaaaaatactagtttggt |
8856143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 14367296 - 14367030
Alignment:
| Q |
7 |
aacttgagagtcaataaccatatgctaagaatatctcagaccttataataatataaaaggattatccattcgacgcatataacaaccgtgctccaaaatc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14367296 |
aacttgagagtcaataaccatatgctaagaatatctcagaccttataaaaatataaa-ggattatccattcgacgcatataacaactgtgctccaaaatc |
14367198 |
T |
|
| Q |
107 |
atgtgatgggagggataggaaaatctttaaattagttttcattaaagccatcaaacagtatgatcttttatcctatattttatggtagctgttgcgtaaa |
206 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||| |
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| T |
14367197 |
atgtgatgggagggatagacaaatctttaaatttgttttcatgaaagc-atcaaacagtatgatcttttaccctatattttatggtagctattgcataaa |
14367099 |
T |
|
| Q |
207 |
caagggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaaa |
275 |
Q |
| |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14367098 |
caaaggcaactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaaa |
14367030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 25556065 - 25556015
Alignment:
| Q |
7 |
aacttgagagtcaataaccatatgctaagaatatctcagaccttataataa |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25556065 |
aacttgagagtcaataaccatatgctaagaatatctcagaccttataataa |
25556015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 19576249 - 19576528
Alignment:
| Q |
7 |
aacttgagagtcaataaccatatgctaagaatatctcagaccttataataatataaaaggattatccattcgacgcatataacaaccgtgctccaaaatc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19576249 |
aacttgagagtcaataaccatatgctaagaatatctcagaccttataaaaatataaa-ggattatccattcgacgcatataacaactgtgctccaaaatc |
19576347 |
T |
|
| Q |
107 |
atgtgatgggagggataggaaaatctttaaattagttttcattaaagccatcaaacagtatgatcttttatcctatattttatggtagctgttgcgtaaa |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||| |
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| T |
19576348 |
atgtgatgggagggatagacaaatctttaaattagttttcatgaaagc-atcaaacagtatgatcttttaccctatattttatggtagctattgcataaa |
19576446 |
T |
|
| Q |
207 |
caagggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaaaaatactagtttggt |
289 |
Q |
| |
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||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
19576447 |
caaaggcaactgaagcatcttaaattgctaaatattgaagtaaataaacaaatccttaaattaacc-caaatacgagtttggt |
19576528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 285 - 483
Target Start/End: Complemental strand, 11391239 - 11391037
Alignment:
| Q |
285 |
ttggtactaaattttctacattaatt----gatgaaaaatatccaacatatgtatacattaatataaggctttgaagctcctcttaataaactgaaaaga |
380 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| |
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| T |
11391239 |
ttggtactaaattttctacattaattaattgatgaaaaatatccaacatatgtatacattaatataaggctttcaagttcctcttaataatctgaaaaga |
11391140 |
T |
|
| Q |
381 |
aaaatattgtcccatattgagacaaattctatgataaaaaagttttttggagatttctcttttagcaacacatgcaacctcacaataatctcgacttgaa |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11391139 |
aaaatattgtcccatattgagacaaattctatgataaaaaagttttttggagatttctcttttagcaacacatgcaacctcacaataatctcgacttgaa |
11391040 |
T |
|
| Q |
481 |
aat |
483 |
Q |
| |
|
||| |
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|
| T |
11391039 |
aat |
11391037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 289 - 483
Target Start/End: Original strand, 11419414 - 11419587
Alignment:
| Q |
289 |
tactaaattttctacattaattgatgaaaaatatccaacatatgtatacattaatataaggctttgaagctcctcttaataaactgaaaagaaaaatatt |
388 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
11419414 |
tactaaattttctacattaattgatgaaaaatatcgaacatatgtatacattaatataaggctttgaag---ctcttaataaactgaaaagaacaat--- |
11419507 |
T |
|
| Q |
389 |
gtcccatattgagacaaattctatgataaaaaagttttttggagatttctcttttagcaacacatgcaacctcacaataatctcgacttgaaaat |
483 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
11419508 |
---------------aaattctaggataaaaaagttttttggagatttctcttttagcaaaacatgcaacctcacaataatctcgacttgaaaat |
11419587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 26383409 - 26383272
Alignment:
| Q |
7 |
aacttgagagtcaataaccatatgctaagaatatctcagaccttataataatataaaaggattatccattcgacgcatataacaaccgtgctccaaaatc |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26383409 |
aacttgagactcaataaccatatgctaagaatatctcagaccgtataataatataaaaggattatccattcgacgcatataacaaccgtgctccaaaatc |
26383310 |
T |
|
| Q |
107 |
atgtgatgg---gagggataggaaaatctttaaattag |
141 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||| |
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|
| T |
26383309 |
atgtgatgggaggagggatagacaaatctttaaattag |
26383272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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