View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19642_low_7 (Length: 372)

Name: NF19642_low_7
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19642_low_7
NF19642_low_7
[»] chr8 (14 HSPs)
chr8 (152-351)||(36827349-36827553)
chr8 (152-349)||(14549552-14549749)
chr8 (152-293)||(44673109-44673250)
chr8 (156-365)||(30392387-30392601)
chr8 (152-365)||(18169589-18169801)
chr8 (152-365)||(18633155-18633367)
chr8 (152-331)||(6200493-6200677)
chr8 (158-293)||(3682303-3682433)
chr8 (163-357)||(10661464-10661662)
chr8 (152-365)||(36909905-36910107)
chr8 (156-361)||(33068904-33069109)
chr8 (152-241)||(5802513-5802602)
chr8 (195-246)||(3006232-3006283)
chr8 (153-265)||(42496458-42496565)
[»] chr5 (29 HSPs)
chr5 (152-370)||(12165500-12165723)
chr5 (152-365)||(2226440-2226658)
chr5 (152-365)||(12680632-12680850)
chr5 (152-365)||(36103168-36103386)
chr5 (152-337)||(9161318-9161506)
chr5 (145-351)||(30265347-30265553)
chr5 (152-317)||(36176446-36176611)
chr5 (157-364)||(38433994-38434206)
chr5 (145-365)||(10174370-10174588)
chr5 (152-299)||(36176677-36176824)
chr5 (152-365)||(32520782-32520995)
chr5 (170-351)||(332856-333044)
chr5 (152-255)||(666889-666992)
chr5 (152-255)||(27885704-27885807)
chr5 (152-255)||(701566-701669)
chr5 (152-255)||(8409335-8409438)
chr5 (152-255)||(38334372-38334475)
chr5 (152-237)||(42545822-42545907)
chr5 (156-255)||(11917804-11917903)
chr5 (152-255)||(15068825-15068928)
chr5 (152-255)||(30002347-30002450)
chr5 (153-337)||(17084444-17084622)
chr5 (154-264)||(23781125-23781228)
chr5 (154-264)||(23868078-23868181)
chr5 (259-318)||(35893346-35893405)
chr5 (247-308)||(42545025-42545086)
chr5 (152-257)||(35893442-35893540)
chr5 (231-286)||(9988541-9988593)
chr5 (162-250)||(23623469-23623557)
[»] chr2 (16 HSPs)
chr2 (145-351)||(25297805-25298017)
chr2 (152-365)||(44979332-44979550)
chr2 (152-365)||(11376194-11376407)
chr2 (152-351)||(18360122-18360326)
chr2 (167-365)||(44035617-44035820)
chr2 (190-339)||(17916453-17916607)
chr2 (152-351)||(19936682-19936881)
chr2 (152-368)||(34910614-34910835)
chr2 (152-255)||(9811739-9811842)
chr2 (152-255)||(20420777-20420880)
chr2 (152-255)||(36412918-36413021)
chr2 (152-242)||(16579002-16579092)
chr2 (167-256)||(42785102-42785191)
chr2 (156-246)||(41166625-41166715)
chr2 (180-250)||(44085956-44086026)
chr2 (311-364)||(20420508-20420561)
[»] chr4 (23 HSPs)
chr4 (152-365)||(40899641-40899859)
chr4 (152-351)||(48996401-48996605)
chr4 (169-299)||(52345086-52345216)
chr4 (153-365)||(30193538-30193755)
chr4 (163-365)||(32137000-32137207)
chr4 (163-365)||(6333624-6333836)
chr4 (152-365)||(8176169-8176377)
chr4 (152-365)||(10218991-10219199)
chr4 (167-317)||(40806397-40806542)
chr4 (152-364)||(31301708-31301915)
chr4 (152-271)||(26477750-26477869)
chr4 (145-257)||(5261404-5261517)
chr4 (167-299)||(52345230-52345352)
chr4 (152-255)||(29639994-29640097)
chr4 (152-255)||(50570579-50570682)
chr4 (203-337)||(23937130-23937269)
chr4 (152-255)||(42558082-42558185)
chr4 (204-299)||(43630912-43631007)
chr4 (152-255)||(29643328-29643431)
chr4 (152-255)||(36078683-36078786)
chr4 (174-255)||(51395253-51395334)
chr4 (191-250)||(45983798-45983857)
chr4 (311-364)||(29639764-29639817)
[»] chr7 (27 HSPs)
chr7 (152-360)||(5932937-5933144)
chr7 (152-370)||(43429471-43429694)
chr7 (152-365)||(42910238-42910451)
chr7 (153-365)||(31876204-31876416)
chr7 (156-351)||(32823918-32824108)
chr7 (153-337)||(27054286-27054475)
chr7 (156-337)||(24360856-24361040)
chr7 (152-317)||(13852667-13852832)
chr7 (152-365)||(36921113-36921328)
chr7 (152-365)||(22366758-22366966)
chr7 (152-364)||(10069872-10070079)
chr7 (152-317)||(18672777-18672942)
chr7 (153-361)||(31982229-31982432)
chr7 (152-262)||(47903635-47903745)
chr7 (152-255)||(3211763-3211866)
chr7 (152-255)||(47070027-47070130)
chr7 (163-255)||(47204089-47204181)
chr7 (152-255)||(10672178-10672281)
chr7 (231-365)||(48675420-48675559)
chr7 (152-255)||(12117959-12118062)
chr7 (152-241)||(8768287-8768376)
chr7 (152-236)||(11205999-11206083)
chr7 (152-295)||(36509029-36509158)
chr7 (152-250)||(31287295-31287393)
chr7 (156-250)||(40849325-40849419)
chr7 (183-250)||(524417-524484)
chr7 (156-194)||(1335884-1335922)
[»] chr3 (18 HSPs)
chr3 (152-365)||(6003950-6004168)
chr3 (152-365)||(35531719-35531932)
chr3 (152-290)||(48032698-48032836)
chr3 (167-365)||(32880614-32880812)
chr3 (152-365)||(21586409-21586621)
chr3 (237-365)||(50562223-50562356)
chr3 (152-255)||(10369610-10369713)
chr3 (226-350)||(33002840-33002969)
chr3 (152-255)||(35401791-35401894)
chr3 (152-255)||(51149289-51149392)
chr3 (167-255)||(34794923-34795011)
chr3 (152-255)||(4669214-4669317)
chr3 (238-351)||(39098260-39098378)
chr3 (152-255)||(33361312-33361415)
chr3 (152-257)||(27641779-27641879)
chr3 (195-262)||(43030827-43030895)
chr3 (276-365)||(43030734-43030828)
chr3 (153-250)||(42362738-42362835)
[»] chr1 (20 HSPs)
chr1 (152-365)||(39256192-39256410)
chr1 (152-368)||(24910610-24910831)
chr1 (152-365)||(33910333-33910551)
chr1 (153-337)||(11899375-11899564)
chr1 (152-365)||(45692104-45692317)
chr1 (167-318)||(33474801-33474952)
chr1 (152-365)||(16529048-16529266)
chr1 (152-365)||(51251987-51252195)
chr1 (167-351)||(32954401-32954585)
chr1 (152-262)||(1160590-1160699)
chr1 (167-255)||(5154969-5155057)
chr1 (157-308)||(6722384-6722529)
chr1 (156-370)||(44918844-44919048)
chr1 (167-255)||(8211639-8211727)
chr1 (167-255)||(20494094-20494182)
chr1 (152-255)||(29707703-29707801)
chr1 (167-220)||(29390137-29390190)
chr1 (311-351)||(29389354-29389394)
chr1 (276-365)||(1160698-1160792)
chr1 (152-184)||(13243208-13243240)
[»] chr6 (11 HSPs)
chr6 (163-351)||(33550645-33550838)
chr6 (152-365)||(35039495-35039713)
chr6 (152-365)||(13801539-13801752)
chr6 (167-365)||(10591146-10591349)
chr6 (167-351)||(15860050-15860238)
chr6 (152-262)||(10390597-10390707)
chr6 (152-357)||(25137460-25137669)
chr6 (152-255)||(12270905-12271008)
chr6 (152-255)||(5866639-5866742)
chr6 (168-283)||(10493964-10494079)
chr6 (279-365)||(10390709-10390801)
[»] scaffold0059 (2 HSPs)
scaffold0059 (156-365)||(69096-69310)
scaffold0059 (156-348)||(77202-77399)
[»] scaffold0013 (2 HSPs)
scaffold0013 (152-365)||(106343-106561)
scaffold0013 (231-365)||(128950-129089)
[»] scaffold0029 (2 HSPs)
scaffold0029 (152-365)||(47327-47545)
scaffold0029 (152-365)||(40131-40349)
[»] scaffold0308 (1 HSPs)
scaffold0308 (152-255)||(5474-5577)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 152 - 351
Target Start/End: Original strand, 36827349 - 36827553
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||| |||||||  ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36827349 gttcggctgaattcgaatgacttttgcactgaaccacacggtttggttcggtttgcggtttgcatctcagcagccgaaccaaaccaaaccaaaccgcaag 36827448  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctctttcg-----atttttccattgttgcaccatcagatttgatt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||     |||||||||||||||||||||||| || ||||    
T  36827449 aataatgaatattacttaaacatgtactagcccaattacatagctcaagattaatctctttcgattcaatttttccattgttgcaccatcaggttcgatt 36827548  T
Q  347 ctaat 351  Q
    |||||    
T  36827549 ctaat 36827553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 152 - 349
Target Start/End: Complemental strand, 14549749 - 14549552
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||     ||||||||||||| |||    
T  14549749 gttcggatgaattcggatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcatccgaa-----ccaaaccaaaccgtaag 14549655  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||     ||||| ||||||||||||| |||||||| || ||||    
T  14549654 aataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcttttgattcgaattttccattgttgtaccatcaggttcgatt 14549555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 152 - 293
Target Start/End: Complemental strand, 44673250 - 44673109
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  44673250 gttcggatgaattcggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaactgcaag 44673151  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacata 293  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44673150 aataatgaatattacttaaacatgtactagcccaattacata 44673109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 156 - 365
Target Start/End: Complemental strand, 30392601 - 30392387
Alignment:
Q  156 ggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    |||||||||| ||||||||||  |||||||||| ||||| ||||| |||||||||||| |||||| || ||||| |||||||||||||||||||||||||    
T  30392601 ggatgaattcggatgacttttttactgaaccgcgcggtttggttcagtttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 30392502  T
Q  256 atgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaa 350  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||||||||     |||||||||||||||| ||||| || || |||||||||||    
T  30392501 atgaatattacttaaacatgtactagcccaattacatagcccaacaataatctcttttgattcgatttttccattgctgcactatgaggtttgattctaa 30392402  T
Q  351 tgcattttcatctct 365  Q
    | | ||| |||||||    
T  30392401 ttcctttccatctct 30392387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 18169589 - 18169801
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||| ||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||     ||||| ||||| |||||    
T  18169589 gttcggatga-ttcggattacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaa-----ccaaatcaaactgcaag 18169682  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||     ||||||||||||||| |||||||||||| |||||||    
T  18169683 aataatgaatattacttaaacatgtactagcccaattacatacctcaagaataatctctatcgattcgatttttccattattgcaccatcaggtttgatt 18169782  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  18169783 ctaattcctttccatctct 18169801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 18633155 - 18633367
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||| ||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||     ||||| ||||| |||||    
T  18633155 gttcggatga-ttcggattacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaa-----ccaaatcaaactgcaag 18633248  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||     ||||||||||||||| |||||||||||| |||||||    
T  18633249 aataatgaatattacttaaacatgtactagcccaattacatacctcaagaataatctctatcgattcgatttttccattattgcaccatcaggtttgatt 18633348  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  18633349 ctaattcctttccatctct 18633367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 152 - 331
Target Start/End: Original strand, 6200493 - 6200677
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| |||||||||||||||||| ||  |||||  |||||||||  ||||||||||| |||| || || |||||||||||||||||||||    
T  6200493 gttcggatgaattcggatgacttttgcactgaatcgtgcggtttcgttcggtttttggtttgcatcttagcaaccaaaccaaaccaaaccaaaccgcaag 6200592  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgca 331  Q
    |||||||||||||||| ||||||||||||||||||||||||| | |||  |||||||||     |||||||||||||||||||||    
T  6200593 aataatgaatattactgaaacatgtactagcccaattacataacccaagaataatctcttttgattcgatttttccattgttgca 6200677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 158 - 293
Target Start/End: Complemental strand, 3682433 - 3682303
Alignment:
Q  158 atgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataat 257  Q
    ||||| || |||||||||| ||||||||||| ||||| |||| ||||||||||||||||||||||| |||||     |||||||||||||||||||||||    
T  3682433 atgaaatcggatgacttttccactgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaa-----ccaaaccaaaccgcaagaataat 3682339  T
Q  258 gaatattacttaaacatgtactagcccaattacata 293  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3682338 gaatattacctaaacatgtactagcccaattacata 3682303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 163 - 357
Target Start/End: Complemental strand, 10661662 - 10661464
Alignment:
Q  163 ttcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaata 262  Q
    |||||||||||||||||||||||| | ||||| |||| |||||||| |||||||||||||| || ||  |||||||||||||||||||| ||||||||||    
T  10661662 ttcagatgacttttgcactgaaccacgcggtttggtttggtttgcg-tttgcatctcagcaaccaaactaaaccaaaccaaaccgcaaggataatgaata 10661564  T
Q  263 ttacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaatgcattt 357  Q
    |  ||||||||||||||||||| ||||||||||||||  || |||| |     |||||||||| |||||||| |||||||  || ||||||||| |||||    
T  10661563 tatcttaaacatgtactagcccgattacatagctcaagaattatcttttttgattcgattttttcattgttgtaccatcatgttcgattctaattcattt 10661464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 36909905 - 36910107
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||||||||||| ||| |||||||||| ||||| || ||||||||||||||||||||||||||||||||     ||| | ||||| |||||||||||||    
T  36909905 gttcggatgaatttagacgacttttgcattgaactgcgcggttcggttcggtttgcggtttgcatctcag-----gaaccgaaccataccaaaccgcaag 36909999  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct----ttcgatttttccattgttgcaccatcagatttgattc 347  Q
    ||||||||||||         |||||||||||||||||||| ||||||  ||||||| |    ||| |||||||||||||||||||||||| ||||||||    
T  36910000 aataatgaatat---------atgtactagcccaattacat-gctcaagaataatctttttgattccatttttccattgttgcaccatcaggtttgattc 36910089  T
Q  348 taatgcattttcatctct 365  Q
    |||| ||||| |||||||    
T  36910090 taattcatttccatctct 36910107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 361
Target Start/End: Complemental strand, 33069109 - 33068904
Alignment:
Q  156 ggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    |||||| ||| ||||||||||||||||||||  |||   ||||| | |||||||||||||||| |||| ||||| ||||| |||||||||| ||| ||||    
T  33069109 ggatgatttcggatgacttttgcactgaacc--acg---cggtttgatttgcggtttgcatcttagcaaccgaaccaaacgaaaccaaaccacaaaaata 33069015  T
Q  256 atgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaa 350  Q
    || |||||||||||||  ||||| |||||||||||||| |||||  |||||||||     || |||||||||||||||||||||||| ||| ||||||||    
T  33069014 atcaatattacttaaatttgtaccagcccaattacataactcaagaataatctcttttgatttgatttttccattgttgcaccatcaaattcgattctaa 33068915  T
Q  351 tgcattttcat 361  Q
    | | |||||||    
T  33068914 ttccttttcat 33068904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 5802513 - 5802602
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaacc 241  Q
    |||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| || || |||||||||||    
T  5802513 gttcggatgagttcagatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccaaaccaaaccaaacc 5802602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 3006232 - 3006283
Alignment:
Q  195 cggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaacc 246  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  3006232 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 3006283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 42496458 - 42496565
Alignment:
Q  153 ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaaga 252  Q
    ||||||||||||   |||| ||||||||||||||||||||||||||||| |||| | |||  |||| | |     |||| ||||||| ||||||||||||    
T  42496458 ttcggatgaatttgaatgatttttgcactgaaccgcacggttcggttcgatttgtgatttatatcttaac-----aatcgaaccaaatcaaaccgcaaga 42496552  T
Q  253 ataatgaatatta 265  Q
    |||||||||||||    
T  42496553 ataatgaatatta 42496565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 152 - 370
Target Start/End: Original strand, 12165500 - 12165723
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||| ||||| |||||||||||||||    
T  12165500 gttcggatgaattcggatgacttttgcactgaaccgcatggttcggttcggtttgcagtttgcatctcagcaactgaaccaaacgaaaccaaaccgcaag 12165599  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctctttcgatt-----tttccattgttgcaccatcagatttgatt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||     ||||||||||||||||||||| ||  |||    
T  12165600 aataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatctttccattgttgcaccatcaggttcaatt 12165699  T
Q  347 ctaatgcattttcatctctctcga 370  Q
     |||| | ||||||||||| ||||    
T  12165700 ttaattccttttcatctctttcga 12165723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 2226440 - 2226658
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||    
T  2226440 gttcggatgaattcggatgacttttgcacttaaccgcgcggttcagttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgccag 2226539  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||     |||||||||||||||||||||||||||| || ||||    
T  2226540 aataatgaatattacttaaacatgtattagcccaattacatagctcatgaataatctcttttgattcgatttttccattgttgcaccatcaggttcgatt 2226639  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  2226640 ctaattcctttccatctct 2226658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 12680632 - 12680850
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||| ||||||||| ||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  12680632 gttcagatgaattcggatgacttttgcaatgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaag 12680731  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||| |||||||||||||||||||||||||||||||||||||| || ||| |||||||||     |||||||||||||||||||||||||||| || ||||    
T  12680732 aatgatgaatattacttaaacatgtactagcccaattacataacttaaaaataatctcttttgattcgatttttccattgttgcaccatcaggttcgatt 12680831  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  12680832 ctaattcctttccatctct 12680850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 36103168 - 36103386
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||  ||||||||||||||| ||||| |||||||||||||||||||||    
T  36103168 gttcggatgaattcagatgacttttgcactgaaccgcgcggttcgttttggtttgtagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaag 36103267  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatc-----tctttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||  ||||||     |  |||||||||||||||||||||||||||  || ||||    
T  36103268 aataatgaatattacttgaacatgtactagcccaactacatagctcaagaataatcgtttttgattcgatttttccattgttgcaccatcaagttcgatt 36103367  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  36103368 ctaattcctttccatctct 36103386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 152 - 337
Target Start/End: Complemental strand, 9161506 - 9161318
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||    
T  9161506 gttcggatgaattcagatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgaatctcagcaaccgaaccaaaccaaacccaaccgcaag 9161407  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatca 337  Q
    |||||||||||||||||||| ||| ||||||||||  |||||||||| | |||||||||     |||||||||||||||||||||||||||    
T  9161406 aataatgaatattacttaaatatgcactagcccaa--acatagctcagaaataatctcttttgattcgatttttccattgttgcaccatca 9161318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 145 - 351
Target Start/End: Original strand, 30265347 - 30265553
Alignment:
Q  145 cgcacttg-ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaa 243  Q
    |||||||| ||||||||||||||||||||||||||||| ||||     || ||||||||||||||||||||||||||||| ||||| |||| ||||||||    
T  30265347 cgcacttgattcggatgaattcagatgacttttgcactaaacc-----gtacggttcggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaa 30265441  T
Q  244 accgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaagataa---tctc-tttcgatttttccattgttgcaccatcaga 339  Q
    | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||   | ||  |||||||||||||||||||||||||||      
T  30265442 atcgcaagaataatgaatattacttaatcatgtgctagcccaattacatagctcaaaaataacgctttcaattcgatttttccattgttgcaccatcaag 30265541  T
Q  340 tttgattctaat 351  Q
    || |||||||||    
T  30265542 ttcgattctaat 30265553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 152 - 317
Target Start/End: Original strand, 36176446 - 36176611
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||| |||||||| ||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  36176446 gttcgaatgaattcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccgcaag 36176545  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctctttcgatt 317  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||  | ||||||||| ||||    
T  36176546 aataatgactattacttaaacgtgtactagcccaattacatagctcaagaaaaatctcttttgatt 36176611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 157 - 364
Target Start/End: Complemental strand, 38434206 - 38433994
Alignment:
Q  157 gatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataa 256  Q
    ||||||||  |||||||||||||||||||||   ||||||||| | ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  38434206 gatgaatttggatgacttttgcactgaaccgtgaggttcggtttgatttgcggtttgtatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataa 38434107  T
Q  257 tgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaat 351  Q
      |||||||||||||| ||||||||||||||||||||||  ||  |||||||||     |||||||||||||||||||||||||||  || |||||||||    
T  38434106 gaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgcaccatcacgttcgattctaat 38434007  T
Q  352 gcattttcatctc 364  Q
     | ||||||||||    
T  38434006 tctttttcatctc 38433994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 145 - 365
Target Start/End: Complemental strand, 10174588 - 10174370
Alignment:
Q  145 cgcacttg-ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaa 243  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| ||||| | |||| ||||||||||||||||||||| ||||| |||||||||||||    
T  10174588 cgcacttgattcggatgaattcggatgacttttgcactgaaccgcgcggtttg-ttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaa 10174490  T
Q  244 accgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcag 338  Q
    |||||||    |||||||||||||||||||||||||| |||||||||||| ||||   | |||||||     |||||||||| |||||||||||||||||    
T  10174489 accgcaa----aatgaatattacttaaacatgtactatcccaattacataactca---agaatctcttttgattcgattttttcattgttgcaccatcag 10174397  T
Q  339 atttgattctaatgcattttcatctct 365  Q
     || |||| |||| |||||||||||||    
T  10174396 gttcgattataattcattttcatctct 10174370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 152 - 299
Target Start/End: Original strand, 36176677 - 36176824
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||| |||||||| ||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  36176677 gttcgaatgaattcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccgcaag 36176776  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaa 299  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  36176777 aataatgactattacttaaacgtgtactagcccaattacatagctcaa 36176824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 32520782 - 32520995
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||||| |||||||| | |||||||||||| |||     |||||||||||||||||||    
T  32520782 gttcggatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcgatctgcatctcagcaaccg-----aaccaaaccaaaccgcaag 32520876  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||| |||||||||||||||| |||||||||||||||||||||  | ||  |||||||||     |||||||||| ||||||||||||||||| || ||||    
T  32520877 aatgatgaatattacttaaagatgtactagcccaattacataatttaagaataatctcttttgattcgattttttcattgttgcaccatcaggttcgatt 32520976  T
Q  347 ctaatgcattttcatctct 365  Q
    ||| | ||||| |||||||    
T  32520977 ctagttcatttccatctct 32520995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 351
Target Start/End: Original strand, 332856 - 333044
Alignment:
Q  170 gacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattactta 269  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||    
T  332856 gacttttgcactgaaccgcgcagttcggtttggtttgcggtttgcatctcagcatccgaaccaaaccaaactaaaccgcaagaataatgaatattactta 332955  T
Q  270 aacatgtactagcccaattac--atagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaat 351  Q
    |||||||||| ||||||||||  |||||||||  ||||||| |     ||||||||||||||  |||||||||||  || |||||||||    
T  332956 aacatgtactggcccaattacatatagctcaagaataatctattttgattcgatttttccataattgcaccatcaagttcgattctaat 333044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 666889 - 666992
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  666889 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 666988  T
Q  252 aata 255  Q
    ||||    
T  666989 aata 666992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 27885704 - 27885807
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  27885704 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 27885803  T
Q  252 aata 255  Q
    ||||    
T  27885804 aata 27885807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 701669 - 701566
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||  ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  701669 gttcggatgagtttggatgacttttagactaaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 701570  T
Q  252 aata 255  Q
    ||||    
T  701569 aata 701566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 8409438 - 8409335
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  8409438 gttcggatgagttcggatgacttttagactgaatcgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 8409339  T
Q  252 aata 255  Q
    ||||    
T  8409338 aata 8409335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 38334372 - 38334475
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||     
T  38334372 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaactaaaccaaaccgcaaa 38334471  T
Q  252 aata 255  Q
    ||||    
T  38334472 aata 38334475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 42545907 - 42545822
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaacca 237  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||| |||||||    
T  42545907 gttcggatgaattcagatgacttttgcactaaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccgaaccaaacca 42545822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 156 - 255
Target Start/End: Complemental strand, 11917903 - 11917804
Alignment:
Q  156 ggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    |||||| ||| ||||||||||  ||| |||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  11917903 ggatgagttcggatgacttttagactaaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 11917804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 15068928 - 15068825
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| ||||||||||||||||||||||||||||||| || || || ||||||||||||||||||||     
T  15068928 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaaccgcaaa 15068829  T
Q  252 aata 255  Q
    ||||    
T  15068828 aata 15068825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 30002450 - 30002347
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||| ||||  |||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||     
T  30002450 gttcggatgagttcggatgatttttagactgaaccgcgcggttcggttcggtttgcggtttacatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 30002351  T
Q  252 aata 255  Q
    ||||    
T  30002350 aata 30002347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 153 - 337
Target Start/End: Original strand, 17084444 - 17084622
Alignment:
Q  153 ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaaga 252  Q
    ||||||||||||||||||||| ||||| |||||||| |  ||||||||| ||| | ||||||||||||||| |||||          |||||||||||||    
T  17084444 ttcggatgaattcagatgactgttgcattgaaccgcgca-ttcggttcgatttccagtttgcatctcagcaaccgaa----------ccaaaccgcaaga 17084532  T
Q  253 ataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatca 337  Q
    ||||| |||||||||||||| ||||||| ||||||||||||   |||| ||||||| |     ||||||||||||||| |||||||||||    
T  17084533 ataatcaatattacttaaacttgtactaacccaattacataatccaaaaataatctattttgattcgatttttccattattgcaccatca 17084622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 23781228 - 23781125
Alignment:
Q  154 tcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaa 253  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||||||       ||||||||||||| | ||| ||| |||||||||||||||| ||    
T  23781228 tcggatgatttcagatgacttttgcactgaactgcgcggttcggttcggt-------ttgcatctcagcaactgaaccaagccaaaccaaaccgcaaaaa 23781136  T
Q  254 taatgaatatt 264  Q
    |||||||||||    
T  23781135 taatgaatatt 23781125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 23868181 - 23868078
Alignment:
Q  154 tcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaa 253  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||||||       ||||||||||||| | ||| ||| |||||||||||||||| ||    
T  23868181 tcggatgatttcagatgacttttgcactgaactgcgcggttcggttcggt-------ttgcatctcagcaactgaaccaagccaaaccaaaccgcaaaaa 23868089  T
Q  254 taatgaatatt 264  Q
    |||||||||||    
T  23868088 taatgaatatt 23868078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 35893405 - 35893346
Alignment:
Q  259 aatattacttaaacatgtactagcccaattacatagctcaaagataatctctttcgattt 318  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  35893405 aatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattt 35893346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 42545086 - 42545025
Alignment:
Q  247 gcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatct 308  Q
    ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||  |||||||    
T  42545086 gcaagaataatgaatattacttaaatatgtaatagcccaataacatagctcaagaataatct 42545025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 257
Target Start/End: Complemental strand, 35893540 - 35893442
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||| |||||| ||| |||| |||||       || ||||||||||| ||  | | ||||||||||||||||||||||    
T  35893540 gttcggatgaattcggatgacttttgtactgaatcgcgcggtccggtt-------cgatttgcatctcaacaatcaagtcaaaccaaaccaaaccgcaag 35893448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 9988541 - 9988593
Alignment:
Q  231 caaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaa 286  Q
    ||||||||||||||||||||   |||| ||||||| |||||| |||||||||||||    
T  9988541 caaaccaaaccaaaccgcaa---taatcaatattatttaaacttgtactagcccaa 9988593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 23623557 - 23623469
Alignment:
Q  162 attcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaa 250  Q
    |||| ||| ||||||  ||| ||||||| |||| |||| |||||||||||| ||| | |  | ||||| ||||||||||||||||||||    
T  23623557 attcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcatttgacaaaccgaaccaaaccaaaccaaaccgcaa 23623469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 145 - 351
Target Start/End: Original strand, 25297805 - 25298017
Alignment:
Q  145 cgcacttg-ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaa 243  Q
    |||||||| ||||||||||||| ||||||||||||  ||||||||||||||||||| |||||| |||||||||||||||| ||||| |||||||||||||    
T  25297805 cgcacttgattcggatgaattcggatgacttttgctttgaaccgcacggttcggtttggtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaa 25297904  T
Q  244 accgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcag 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||     ||||||||||||||||||||||||||||    
T  25297905 accgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatcgcttttgattcgatttttccattgttgcaccatcag 25298004  T
Q  339 atttgattctaat 351  Q
     || |||||||||    
T  25298005 gttcgattctaat 25298017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 44979332 - 44979550
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||| |||||||||||||||| ||||| | || ||||||||||||||||||||||  ||||| |||||||||||||||||||||    
T  44979332 gttcggatgaattcggatgaattttgcactgaaccgcgcggtttgatttggtttgcggtttgcatctcagctaccgaaccaaaccaaaccaaaccgcaag 44979431  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||   |||||||||     ||||||||||||||||||||||||| || ||  |||    
T  44979432 aataatgaatgttacttaaacatgtactagcccaattacatagcccaggaataatctcttttgattcgatttttccattgttgcaccatgaggttcaatt 44979531  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  44979532 ctaattcctttccatctct 44979550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 11376407 - 11376194
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | ||| |||||||     |||||||||    
T  11376407 gttcggatgaattcagatgacttttgcactgaaccgcgcggttcggttcggtttgcagtttgcatctcagcaactgaaccaaacca-----aaccgcaag 11376313  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||| |||||||||||||||||||||||||| ||||| |||||| |||  |||||| ||     |||||||||||||||||||||||||||| || ||||    
T  11376312 aatactgaatattacttaaacatgtactagctcaattgcatagcccaagaataatcgcttttgattcgatttttccattgttgcaccatcaggttcgatt 11376213  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  11376212 ctaattcctttccatctct 11376194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 152 - 351
Target Start/End: Complemental strand, 18360326 - 18360122
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||| |||||  |||||||||||| |||||| | |||||||||| ||||| | ||||||||||||||| ||||| |||||||||||||||||||||    
T  18360326 gttcggataaattcgaatgacttttgcattgaaccacgcggttcggtttggtttacagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaag 18360227  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||| |||||||||||||| |||||||||||||||||||||| | || |||||||||     |||||||||||||||||||||||||||  || ||||    
T  18360226 aataatcaatattacttaaacttgtactagcccaattacatagcccgaaaataatctcttttgattcgatttttccattgttgcaccatcatgttcgatt 18360127  T
Q  347 ctaat 351  Q
    |||||    
T  18360126 ctaat 18360122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 167 - 365
Target Start/End: Complemental strand, 44035820 - 44035617
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattac 266  Q
    |||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  44035820 gatgacttttgcactgaaccgcgcggttcggtttggtttacggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaataatgaatattac 44035721  T
Q  267 ttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaatgcattttcat 361  Q
    |||||||||||||||| || ||||||| |||||  |||||||||     |||||||||| ||||||||||| ||||  || ||||||||| | ||| |||    
T  44035720 ttaaacatgtactagctcagttacataactcaagaataatctcttttgattcgattttttcattgttgcacgatcaagttcgattctaattcctttccat 44035621  T
Q  362 ctct 365  Q
    ||||    
T  44035620 ctct 44035617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 190 - 339
Target Start/End: Original strand, 17916453 - 17916607
Alignment:
Q  190 cggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaatta 289  Q
    |||||||||| |||||| |||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17916453 cggttcggtttggtttgtggtttgcatctcagcaaccgagccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaatta 17916552  T
Q  290 catagctcaaagataatctctttcga-----tttttccattgttgcaccatcaga 339  Q
    ||||||||||  ||||||||||| ||     |||||||||| |||||||||||||    
T  17916553 catagctcaagaataatctcttttgattcattttttccattattgcaccatcaga 17916607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 152 - 351
Target Start/End: Original strand, 19936682 - 19936881
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||||||||||||||||| ||||| |||||||| || |||||||||||||||||| ||||| ||||||||     || |||||||||||||||||||||    
T  19936682 gttcggatgaattcagatgtctttttcactgaactgcgcggttcggttcggtttgcagtttgtatctcagc-----aaccaaaccaaaccaaaccgcaag 19936776  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||||  ||||| | |     |||||||||| ||||||||||||||||  || ||||    
T  19936777 aataatgaatattacttatacatgtactagctcaaatacatagctcaagaataatatattttgattcgattttttcattgttgcaccatcatgttcgatt 19936876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 152 - 368
Target Start/End: Complemental strand, 34910835 - 34910614
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttg-----cggtttgcatctcagcagccgaatcaaaccaaaccaaacc 246  Q
    |||||||||||||||||||||||||||| | |||||| || ||||||||||||||     ||||||| |||| |||| |||     || |||||||||||    
T  34910835 gttcggatgaattcagatgacttttgcaataaaccgcgcgtttcggttcggtttggtttacggtttgaatctgagcaaccg-----aaacaaaccaaacc 34910741  T
Q  247 gcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatt 341  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||  ||||| |||     |||||||||||||||||||||||||||  ||    
T  34910740 gcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccatcaagtt 34910641  T
Q  342 tgattctaatgcattttcatctctctc 368  Q
     ||||||||| | ||||||| ||||||    
T  34910640 cgattctaattcgttttcatttctctc 34910614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 9811842 - 9811739
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  9811842 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 9811743  T
Q  252 aata 255  Q
    ||||    
T  9811742 aata 9811739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 20420880 - 20420777
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||     
T  20420880 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaa 20420781  T
Q  252 aata 255  Q
    ||||    
T  20420780 aata 20420777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 36412918 - 36413021
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||  ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||     
T  36412918 gttcggatgagttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaa 36413017  T
Q  252 aata 255  Q
    ||||    
T  36413018 aata 36413021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 16579092 - 16579002
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaacca 242  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||    
T  16579092 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaactgaaccaaaccaaacca 16579002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 42785102 - 42785191
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataa 256  Q
    ||||||||||||| |||||| | |||||||||| ||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||    
T  42785102 gatgacttttgcattgaaccacgcggttcggtttggtttgcggtttgcatctcagaaaccgaaccaaaccaaaccaaaccgtaagaataa 42785191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 41166715 - 41166625
Alignment:
Q  156 ggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaacc 246  Q
    ||||| |||||||| |||||| |||| ||||||| |||| | || |||||||||||| ||| | | || ||||| ||||||||||||||||    
T  41166715 ggatgcattcagatcactttttcactcaaccgcatggtttgatttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaacc 41166625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 44086026 - 44085956
Alignment:
Q  180 ctgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaa 250  Q
    |||||||||| |||| |||| |||||| ||||| ||| ||| || ||||| ||||||||||||||||||||    
T  44086026 ctgaaccgcatggtttggtttggtttgtggttttcatttcaccaaccgaaccaaaccaaaccaaaccgcaa 44085956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 364
Target Start/End: Complemental strand, 20420561 - 20420508
Alignment:
Q  311 ttcgatttttccattgttgcaccatcagatttgattctaatgcattttcatctc 364  Q
    ||||||||||||||||||||| |||||| |||||||||||| | ||| ||||||    
T  20420561 ttcgatttttccattgttgcatcatcaggtttgattctaattcctttccatctc 20420508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 40899641 - 40899859
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  40899641 gttcggatgaattcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaag 40899740  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||     ||||||||||||||||||||||||||| |||  |||    
T  40899741 aataatgaatgttacttaaacatgtaatagcccaattacatagcccaaggataatctcttttgattcgatttttccattgttgcaccatcaaattcaatt 40899840  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  40899841 ctaattcctttccatctct 40899859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 152 - 351
Target Start/End: Complemental strand, 48996605 - 48996401
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  48996605 gttcggatcaattcggatgacttttgcaatgaaccgcgcggttcggtttgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaag 48996506  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||||||||||||||||||| |||||||||||  ||  |||||||||     |||||||||| |||||||||||||||| ||| ||||    
T  48996505 aataatgaatattacttaaacatgtactagcctaattacatagcctaagaataatctcttttgattcgattttttcattgttgcaccatcaaattcgatt 48996406  T
Q  347 ctaat 351  Q
    |||||    
T  48996405 ctaat 48996401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 169 - 299
Target Start/End: Complemental strand, 52345216 - 52345086
Alignment:
Q  169 tgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattactt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  52345216 tgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattactt 52345117  T
Q  269 aaacatgtactagcccaattacatagctcaa 299  Q
    ||||||||||||| || ||| ||||||||||    
T  52345116 aaacatgtactagtccgattgcatagctcaa 52345086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 153 - 365
Target Start/End: Original strand, 30193538 - 30193755
Alignment:
Q  153 ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaaga 252  Q
    |||||||||||||  |||||||||||| |||||||  ||||||||||| |||||| ||||||||||||||| ||||| |||||||||||| |||||||||    
T  30193538 ttcggatgaattcgtatgacttttgcaatgaaccgtgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaaccaaaccataccgcaaga 30193637  T
Q  253 ataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattc 347  Q
    ||||||||||||||||||| ||||| || ||||||||||||||||||  ||||| |||     |||||||||||||||||||||||||||| || ||||     
T  30193638 ataatgaatattacttaaatatgtattatcccaattacatagctcaagaataatttcttttgattcgatttttccattgttgcaccatcaggttcgattt 30193737  T
Q  348 taatgcattttcatctct 365  Q
    |||| | ||| |||||||    
T  30193738 taattcctttccatctct 30193755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 163 - 365
Target Start/End: Complemental strand, 32137207 - 32137000
Alignment:
Q  163 ttcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaata 262  Q
    ||||||||||||||||| |||||||  |||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||| |||||||    
T  32137207 ttcagatgacttttgcaatgaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccacaagaatgatgaata 32137108  T
Q  263 ttacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaatgcattt 357  Q
    |||||||||||||||||||||||||||||||||| ||  ||||| |||     |||||||||| ||||||||||||||||| || |||| |||| | |||    
T  32137107 ttacttaaacatgtactagcccaattacatagcttaagaataatttctttttattcgattttttcattgttgcaccatcaggttcgattttaattccttt 32137008  T
Q  358 tcatctct 365  Q
     |||||||    
T  32137007 ccatctct 32137000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 163 - 365
Target Start/End: Complemental strand, 6333836 - 6333624
Alignment:
Q  163 ttcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaac-----cgcaagaataat 257  Q
    |||||||||||||| ||||||||||| || ||||||||| ||||||| |||||||| |||| ||||| |||||||||||||||     ||||||||||||    
T  6333836 ttcagatgacttttacactgaaccgcgcgattcggttcgatttgcggcttgcatcttagcaaccgaaccaaaccaaaccaaactaaaccgcaagaataat 6333737  T
Q  258 gaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaatg 352  Q
    |||||||||||||| |||||||||||||||||||||||||||  |||||||||     ||| |||||||||| ||||||||||||| || |||||||||     
T  6333736 gaatattacttaaatatgtactagcccaattacatagctcaagaataatctcttttgattcaatttttccatcgttgcaccatcaggttcgattctaatt 6333637  T
Q  353 cattttcatctct 365  Q
    ||||| |||||||    
T  6333636 catttccatctct 6333624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 8176169 - 8176377
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||||||||| ||  |||||||||||||||||||||   |||||||||| |||||||||||||||||||||          ||||||||||||||||||    
T  8176169 gttcggatgaactcgaatgacttttgcactgaaccgcgtcgttcggttcgatttgcggtttgcatctcagca----------accaaaccaaaccgcaag 8176258  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||     |||||||||||||||||||||||||||| || |||     
T  8176259 aataatgaagattacttaaacatgtactagcccaattacatagcccaaaaataatctcttttgattcgatttttccattgttgcaccatcaggttcgatc 8176358  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  8176359 ctaattcctttccatctct 8176377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 10219199 - 10218991
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||| ||||| || |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||       | |   ||||||||||||||||||    
T  10219199 gttcgaatgaactcggatgacttttacactgaaccgcgcggttcggtttggtttgcggtttgcatctca-------agt---accaaaccaaaccgcaag 10219110  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctc-----tttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||      || ||||||||||||||||||||||| | || ||||    
T  10219109 aataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcatttgattagatttttccattgttgcaccatctggttcgatt 10219010  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  10219009 ctaattcctttccatctct 10218991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 167 - 317
Target Start/End: Original strand, 40806397 - 40806542
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattac 266  Q
    |||||||||| ||||||||||||||||| | ||     ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  40806397 gatgacttttacactgaaccgcacggtttgatt-----tgcggtttgcatctcagcaactgaaccaaaccaaaccaaaccgcaagaataatgaatattac 40806491  T
Q  267 ttaaacatgtactagcccaattacatagctcaaagataatctctttcgatt 317  Q
    ||||| |||||||||| ||||||||||||||||  ||||||||||| ||||    
T  40806492 ttaaatatgtactagctcaattacatagctcaagaataatctcttttgatt 40806542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 152 - 364
Target Start/End: Complemental strand, 31301915 - 31301708
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||||||||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||          |||| ||||||||||||||    
T  31301915 gttcggatgaattcagatgactttt-cactgaaccacatggttcagttcggtttgcggtttgcatctcagc----------aaccgaaccaaaccgcaag 31301827  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct------ttcgatttttccattgttgcaccatcagatttgat 345  Q
    |||||| |||||||||||||| |||| ||||||||||||||| |||||  ||||| | |      ||||| |||| ||||||||||||||||| || |||    
T  31301826 aataatcaatattacttaaacttgtattagcccaattacataactcaagaataattttttttttattcgactttttcattgttgcaccatcagtttcgat 31301727  T
Q  346 tctaatgcattttcatctc 364  Q
    |||||| ||||| ||||||    
T  31301726 tctaattcatttccatctc 31301708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 152 - 271
Target Start/End: Original strand, 26477750 - 26477869
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||| ||| |||||  |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| || ||||    
T  26477750 gttcggatgaattcggatgacttttgtactaaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaatccacaag 26477849  T
Q  252 aataatgaatattacttaaa 271  Q
    ||||||||||||||||||||    
T  26477850 aataatgaatattacttaaa 26477869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 5261404 - 5261517
Alignment:
Q  145 cgcacttg-ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaa 243  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |  |||| |||| ||||||||    
T  5261404 cgcacttgattcggatgaattcagatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagaaatcgaaccaaatcaaaccaa 5261503  T
Q  244 accgcaagaataat 257  Q
    || |||||||||||    
T  5261504 actgcaagaataat 5261517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 167 - 299
Target Start/End: Complemental strand, 52345352 - 52345230
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattac 266  Q
    ||||||||||| |||||| |||| |||||||||||||||| |||||||||||||||| |||||          |||||||||||||||||||||||||||    
T  52345352 gatgacttttgtactgaatcgcatggttcggttcggtttgtggtttgcatctcagcaaccgaa----------ccaaaccgcaagaataatgaatattac 52345263  T
Q  267 ttaaacatgtactagcccaattacatagctcaa 299  Q
    |||||||||||||||||||||| ||||||||||    
T  52345262 ttaaacatgtactagcccaattgcatagctcaa 52345230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 29640097 - 29639994
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  29640097 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 29639998  T
Q  252 aata 255  Q
    ||||    
T  29639997 aata 29639994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 50570579 - 50570682
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  50570579 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 50570678  T
Q  252 aata 255  Q
    ||||    
T  50570679 aata 50570682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 203 - 337
Target Start/End: Original strand, 23937130 - 23937269
Alignment:
Q  203 tttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaaga 302  Q
    |||| ||||||||||||| || | ||| |||||||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||  |    
T  23937130 tttgtggtttgcatctcaacaactgaaccaaaccaaactaaaccgcaagaataataaatattacttaaacatatactagtccaattacataactcaagaa 23937229  T
Q  303 taatctct-----ttcgatttttccattgttgcaccatca 337  Q
    ||||||||     || ||||||||||||||||||||||||    
T  23937230 taatctctttagatttgatttttccattgttgcaccatca 23937269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 42558185 - 42558082
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||  |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  42558185 gttcggatgagttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 42558086  T
Q  252 aata 255  Q
    ||||    
T  42558085 aata 42558082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 204 - 299
Target Start/End: Complemental strand, 43631007 - 43630912
Alignment:
Q  204 ttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaa 299  Q
    ||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  43631007 ttgcggttgacatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaaaatgtaatagcccaactacatagctcaa 43630912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 29643328 - 29643431
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| ||||||||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||     
T  29643328 gttcggatgagttcggatgacttttaaactgaaccgcgcggttcggttcggtttgtggcttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 29643427  T
Q  252 aata 255  Q
    ||||    
T  29643428 aata 29643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 36078786 - 36078683
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| ||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||     
T  36078786 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 36078687  T
Q  252 aata 255  Q
    ||||    
T  36078686 aata 36078683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 51395334 - 51395253
Alignment:
Q  174 tttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    ||||||||||||||| | ||||||||| |||| |||||| ||||| || || |||| |||||||||||||||||||||||||    
T  51395334 tttgcactgaaccgcgcagttcggttcagtttacggtttacatctgagaagtcgaaccaaaccaaaccaaaccgcaagaata 51395253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 45983857 - 45983798
Alignment:
Q  191 ggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaa 250  Q
    |||| |||| |||||||||||| ||| | | || ||||||||||||||||||||||||||    
T  45983857 ggtttggtttggtttgcggttttcattttaccaaccgaatcaaaccaaaccaaaccgcaa 45983798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 364
Target Start/End: Complemental strand, 29639817 - 29639764
Alignment:
Q  311 ttcgatttttccattgttgcaccatcagatttgattctaatgcattttcatctc 364  Q
    ||||||||||||||||||||| |||||| || ||||||||| | ||| ||||||    
T  29639817 ttcgatttttccattgttgcatcatcaggttcgattctaattcctttccatctc 29639764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 152 - 360
Target Start/End: Complemental strand, 5933144 - 5932937
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtt-----tgcggtttgcatctcagcagccgaatcaaaccaaaccaaacc 246  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||     ||||||||| ||||||||| ||||| |||||||||||||| |    
T  5933144 gttcggataaattcagatgacttttgcactgaaccgcgcggttcggttcggttcggtttgcggtttgtatctcagcaaccgaaccaaaccaaaccaaatc 5933045  T
Q  247 gcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctctttcgatttttccattgttgcaccatcagatttgatt 346  Q
    | |||||||||||      ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  5933044 gtaagaataatga------cttaaacatgtactagcccaattacatagctcaagaataatctctttcgatttttccattgttgcaccatcagatttgatt 5932951  T
Q  347 ctaatgcattttca 360  Q
    ||||| ||||||||    
T  5932950 ctaattcattttca 5932937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 152 - 370
Target Start/End: Complemental strand, 43429694 - 43429471
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  43429694 gttcggatgaattcggatgacttttgcactaaaccgcatggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaag 43429595  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||| |||||||||||| |||||| | |||||||||||||||||  | |||||||     |||||||||||||||||||||||||||| ||  |||    
T  43429594 aataatgactattacttaaacgtgtactcgtccaattacatagctcaagaaaaatctcttttgattcgatttttccattgttgcaccatcaggttcaatt 43429495  T
Q  347 ctaatgcattttcatctctctcga 370  Q
    ||||| | ||| ||||||| ||||    
T  43429494 ctaattcctttccatctctttcga 43429471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 42910238 - 42910451
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||     |||||||||||||||||    
T  42910238 gttcggatgaattcggatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaa-----ccaaaccaaaccgcaag 42910332  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||     || ||||||||||||||||||||||||| |  ||||    
T  42910333 aataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcttttgatttgatttttccattgttgcaccatcaggtccgatt 42910432  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  42910433 ctaattcctttccatctct 42910451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 153 - 365
Target Start/End: Original strand, 31876204 - 31876416
Alignment:
Q  153 ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaaga 252  Q
    ||||||||||||| ||||||||||||| |||||||  ||||||| || ||||||||||||||||||||||     || |||||||||||||||||||| |    
T  31876204 ttcggatgaattcggatgacttttgcaatgaaccgtgcggttcgatttggtttgcggtttgcatctcagc-----aaccaaaccaaaccaaaccgcaaaa 31876298  T
Q  253 ataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattc 347  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||     ||||||||||||||||||||||||||||||| |||||    
T  31876299 ataatgaatattacttaaacatgtactagcccagttacatagctcaagaataatctcttttaattcgatttttccattgttgcaccatcagattcgattc 31876398  T
Q  348 taatgcattttcatctct 365  Q
    |||| | ||| |||||||    
T  31876399 taattcttttccatctct 31876416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 156 - 351
Target Start/End: Complemental strand, 32824108 - 32823918
Alignment:
Q  156 ggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| |||||    
T  32824108 ggatgaattcggatggcttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagca----------accaaaccaaaccgcatgaata 32824019  T
Q  256 atgaatattacttaaacatgtactagcccaattacatagctcaaagataatctc-----tttcgatttttccattgttgcaccatcagatttgattctaa 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||      |||||||||||||||||||||||||||| || ||||||||    
T  32824018 atgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcctttgattcgatttttccattgttgcaccatcaggttcgattctaa 32823919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 153 - 337
Target Start/End: Original strand, 27054286 - 27054475
Alignment:
Q  153 ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaaga 252  Q
    ||||||||||||||||||||||||||||| |||||  || || |||| |||||||||||||||| ||||||  |||| |||||||||||||||| |||||    
T  27054286 ttcggatgaattcagatgacttttgcactaaaccgtgcgatttggtttggtttgcggtttgcatatcagcaatcgaaccaaaccaaaccaaaccacaaga 27054385  T
Q  253 ataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatca 337  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||  |||||||||     |||||||||| ||||||||||||||||    
T  27054386 ataatgaatattacttaaatatgtactagcccaattacataactcaagaataatctcttttgattcgattttttcattgttgcaccatca 27054475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 156 - 337
Target Start/End: Original strand, 24360856 - 24361040
Alignment:
Q  156 ggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    |||||||||| |||||||||||||| ||||| ||| |||||||||||||  |||||||| |||||||| ||||| |||||||||||||||||||||||||    
T  24360856 ggatgaattcggatgacttttgcacagaaccacacagttcggttcggtt--cggtttgcgtctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 24360953  T
Q  256 atgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatca 337  Q
    |||| ||||||||||| |||||||||||||||||||||||||||  |||||| ||     |||||||||| ||||||||||||||||    
T  24360954 atgactattacttaaatatgtactagcccaattacatagctcaagaataatcccttttgattcgattttttcattgttgcaccatca 24361040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 152 - 317
Target Start/End: Complemental strand, 13852832 - 13852667
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| |||||||||||||||||||||   |||||||||| |||||||||||||||||||||| | ||| ||||||||||||||| |||||    
T  13852832 gttcggatgaattcggatgacttttgcactgaaccgagtggttcggttctgtttgcggtttgcatctcagcaactgaaccaaaccaaaccaaactgcaag 13852733  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctctttcgatt 317  Q
    |||||||||||||| ||||| |||||||| | ||||||||||||||||  ||||||||||| ||||    
T  13852732 aataatgaatattatttaaatatgtactaactcaattacatagctcaagaataatctcttttgatt 13852667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 36921113 - 36921328
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||| ||||||||| |||||| | |||||||||| ||||||| ||||||||||||||| |||     |||||||||||||||||||    
T  36921113 gttcggatgaattcggattacttttgcattgaaccacgcggttcggtttggtttgcagtttgcatctcagcaaccg-----aaccaaaccaaaccgcaag 36921207  T
Q  252 aataatgaatattacttaaacatgtacta--gcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttga 344  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||  |||||| ||     |||||||||| ||||||||||||||||| || ||    
T  36921208 aataatgaatattacttaaacatgtactaacccccaattacatagctcaagaataatcgcttttgattcgattttttcattgttgcaccatcaggttcga 36921307  T
Q  345 ttctaatgcattttcatctct 365  Q
    ||||||| | ||| |||||||    
T  36921308 ttctaattcttttccatctct 36921328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 22366966 - 22366758
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||| ||||||||| ||||||||||||||| |||||  || || ||||||||||||||||||||||| ||||          ||||||||||||||||||    
T  22366966 gttcagatgaattcggatgacttttgcactaaaccgtgcgatttggttcggtttgcggtttgcatcttagca----------accaaaccaaaccgcaag 22366877  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||     |||| ||||||||||||||||||||||| || ||||    
T  22366876 aataatgaatattactcaaacatgtactagcccaattacatagctcaagaataatctctttcaattcggtttttccattgttgcaccatcaggttcgatt 22366777  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  22366776 ctaattcctttccatctct 22366758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 152 - 364
Target Start/End: Complemental strand, 10070079 - 10069872
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||          ||||||||||||||||||    
T  10070079 gttcggatgaattcggatgacttttgcactgaaccgcacagttcagttcggtttgcgatttgcatctcagca----------accaaaccaaaccgcaag 10069990  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||| |||||||||||||| |||||  ||||||||||||||| |||  ||||||| |     || ||||||||||||||||||||||||| |||||||    
T  10069989 aataatcaatattacttaaacttgtaccggcccaattacatagcccaagaataatcttttttgatttgatttttccattgttgcaccatcaggtttgatt 10069890  T
Q  347 ctaatgcattttcatctc 364  Q
    ||||| | ||| ||||||    
T  10069889 ctaattcctttccatctc 10069872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 152 - 317
Target Start/End: Original strand, 18672777 - 18672942
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||| ||||||||| ||||| ||||||| || ||||| | ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||     
T  18672777 gttcagatgaattcggatgatttttgcattggaccgcgcagttcggttcggtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaat 18672876  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctctttcgatt 317  Q
    |||||| |||||||||||||| |||||||||||||||||||||| ||   ||||||||||| ||||    
T  18672877 aataatcaatattacttaaacttgtactagcccaattacatagcacaggaataatctcttttgatt 18672942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 153 - 361
Target Start/End: Original strand, 31982229 - 31982432
Alignment:
Q  153 ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaaga 252  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||| | |||||||||||||||| ||||          ||||||||||||||||| |    
T  31982229 ttcggatgaattcagatgacttttgcactgaactgcgcggtttggtttgatttgcggtttgcatcttagca----------accaaaccaaaccgcaaaa 31982318  T
Q  253 ataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattc 347  Q
    ||||| |||||||||||||  ||||| |||||||||||||||| |||  |||||||||     || |||||||||||||||||||||||| ||| |||||    
T  31982319 ataatcaatattacttaaatttgtaccagcccaattacatagcccaagaataatctcttttgatttgatttttccattgttgcaccatcaaattcgattc 31982418  T
Q  348 taatgcattttcat 361  Q
    |||| | |||||||    
T  31982419 taattccttttcat 31982432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 47903745 - 47903635
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||| |||| ||| ||||||| ||||    
T  47903745 gttcggatgaattcggatgacttttgcactgaaccgcgcagttcgtttcggtttgcggtttgcatctcagcaaccgaaccaaaacaacccaaaccacaag 47903646  T
Q  252 aataatgaata 262  Q
    |||||||||||    
T  47903645 aataatgaata 47903635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 3211763 - 3211866
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  3211763 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 3211862  T
Q  252 aata 255  Q
    ||||    
T  3211863 aata 3211866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 47070130 - 47070027
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  47070130 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 47070031  T
Q  252 aata 255  Q
    ||||    
T  47070030 aata 47070027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 47204089 - 47204181
Alignment:
Q  163 ttcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  47204089 ttcagatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 47204181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 10672281 - 10672178
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||  |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  10672281 gttcggatgagttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 10672182  T
Q  252 aata 255  Q
    ||||    
T  10672181 aata 10672178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 48675559 - 48675420
Alignment:
Q  231 caaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccatt 325  Q
    ||||| ||| ||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||| ||| |||| ||||     || |||| |||||||    
T  48675559 caaacaaaatcaaaccgtaagaataataaatattacttaaacatgtattagcctaattacatagctaaaaaataacctcttttggtttgattattccatt 48675460  T
Q  326 gttgcaccatcagatttgattctaatgcattttcatctct 365  Q
    ||||||||||||| |||||||||||| ||||| |||||||    
T  48675459 gttgcaccatcaggtttgattctaattcatttccatctct 48675420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 12118062 - 12117959
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| ||||||||||||||||||| |||||||||||||| || || |||||||||| |||||||||     
T  12118062 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaaccgcaaa 12117963  T
Q  252 aata 255  Q
    ||||    
T  12117962 aata 12117959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 8768287 - 8768376
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaacc 241  Q
    |||||||||| ||| ||||||||||  |||||||||| ||||||||||||||||| |||||||||||||||| ||||| |||||||||||    
T  8768287 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgtggtttgcatctcagcaaccgaaccaaaccaaacc 8768376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 11205999 - 11206083
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaacc 236  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||    
T  11205999 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaacc 11206083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 295
Target Start/End: Complemental strand, 36509158 - 36509029
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||||||||||||| |||||||||||| |||||||  |||||||||| |||||||||||||    ||||||  ||||          ||||||||||||    
T  36509158 gttcggatgaattcatatgacttttgcattgaaccgtgcggttcggtttggtttgcggtttg----tcagcaatcgaa----------ccaaaccgcaag 36509073  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagc 295  Q
    |||||| |||||||||||||  ||||| ||||||||||||||||    
T  36509072 aataatcaatattacttaaatttgtacgagcccaattacatagc 36509029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 31287295 - 31287393
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaa 250  Q
    ||||||||| |||||||| | ||||  ||| ||||||| |||| |||||||||||||||||  || | | || ||||| ||||||||| ||||||||||    
T  31287295 gttcggatgtattcagatcatttttttactcaaccgcatggtttggttcggtttgcggttttaattttaccaaccgaaccaaaccaaatcaaaccgcaa 31287393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 40849419 - 40849325
Alignment:
Q  156 ggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaa 250  Q
    ||||| |||| ||| ||||||  ||| ||||||| |||| |||| |||||||||||| ||| | | || ||||| ||||||||||||||||||||    
T  40849419 ggatgtattcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 40849325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 524417 - 524484
Alignment:
Q  183 aaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaa 250  Q
    ||||||| |||| |||| |||||||||||| ||| | | || ||||| ||||||||||||||||||||    
T  524417 aaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 524484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 1335922 - 1335884
Alignment:
Q  156 ggatgaattcagatgacttttgcactgaaccgcacggtt 194  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  1335922 ggatgaattcagatgacttttgcactaaaccgcgcggtt 1335884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 6003950 - 6004168
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||  ||||| |||||||||||||||||||||    
T  6003950 gttcggatgaattcggatgacttttgcactgaaccgcgaggtttggttcggtttgcggtttgcatctcagctaccgaaccaaaccaaaccaaaccgcaag 6004049  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||  |||||||||     |||||||||||||||||||||||||||| ||  |||    
T  6004050 aataatgaatgttacttaaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccatcaggttcaatt 6004149  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  6004150 ctaattcctttccatctct 6004168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 35531719 - 35531932
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||     |||||||||||||||||||    
T  35531719 gttcggatgaattcaggtgacttttgcactgaaccgcacggttcagttcgatttgcagtttgcatctcagcaaccg-----aaccaaaccaaaccgcaag 35531813  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatc-----tctttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||     |  |||||||||||||||||||||||||||  || ||||    
T  35531814 aataatgaatattacttaaacatgtactagcccaattgcatagctcaagaataatcgttttttattcgatttttccattgttgcaccatcatgttcgatt 35531913  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  35531914 ctaattcctttccatctct 35531932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 152 - 290
Target Start/End: Original strand, 48032698 - 48032836
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||| ||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48032698 gttcagatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcagccgaaccaaaccaaaccaaaccgcaag 48032797  T
Q  252 aataatgaatattacttaaacatgtactagcccaattac 290  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  48032798 aatcatgaatattacttaaacatgtactagcccaattac 48032836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 167 - 365
Target Start/End: Complemental strand, 32880812 - 32880614
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattac 266  Q
    |||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||| |||||     ||||||||||||||||||| ||||||||||||    
T  32880812 gatgacttttgcactgaaccgcgcagttcggtttggtttacggtttgcatctcagcaaccgaa-----ccaaaccaaaccgcaagaaaaatgaatattac 32880718  T
Q  267 ttaaacatgtactagcccaattacatagctcaaagataatctctttcg-----atttttccattgttgcaccatcagatttgattctaatgcattttcat 361  Q
    ||||||||||||||| |||||||||||||||||   ||||||||||||     |||||||||||||||||||||||| |||||||||||| | ||| |||    
T  32880717 ttaaacatgtactagtccaattacatagctcaagtttaatctctttcgatttgatttttccattgttgcaccatcaggtttgattctaattcctttccat 32880618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 21586409 - 21586621
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||  ||||||||||||||| ||||||      ||||||||||||| ||||||||||||||| ||||| |||||| ||||||| ||||||    
T  21586409 gttcggatgaatttggatgacttttgcactaaaccgc-----gcggttcggtttgcagtttgcatctcagcaaccgaaccaaacc-aaccaaatcgcaag 21586502  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||  ||||| |||     ||||||||||||||||||||||||| || || ||||    
T  21586503 aataatgaatattacttaaacatgtactagccaaattacatagttcaagaataatatctttcgattcgatttttccattgttgcaccatgaggttcgatt 21586602  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  21586603 ctaattcctttccatctct 21586621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 237 - 365
Target Start/End: Original strand, 50562223 - 50562356
Alignment:
Q  237 aaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgca 331  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||     |||||||||||||||||||||    
T  50562223 aaaccaaaccccaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatttttccattgttgca 50562322  T
Q  332 ccatcagatttgattctaatgcattttcatctct 365  Q
    ||||||| || ||||||||| | ||| |||||||    
T  50562323 ccatcaggttcgattctaattcctttccatctct 50562356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 10369713 - 10369610
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  10369713 gttcggatgaattcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 10369614  T
Q  252 aata 255  Q
    ||||    
T  10369613 aata 10369610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 226 - 350
Target Start/End: Complemental strand, 33002969 - 33002840
Alignment:
Q  226 cgaatcaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgattttt 320  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||| |||||| || |||||||||||||||||  |||||||||     ||||||||||    
T  33002969 cgaaccaaactaaaccaaaccgcaagaataatgaatatttcttaaatatgtaccagtccaattacatagctcaataataatctcttttgattcgattttt 33002870  T
Q  321 ccattgttgcaccatcagatttgattctaa 350  Q
    |||||||||||||||||| || ||||||||    
T  33002869 ccattgttgcaccatcaggttcgattctaa 33002840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 35401791 - 35401894
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||     
T  35401791 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaa 35401890  T
Q  252 aata 255  Q
    ||||    
T  35401891 aata 35401894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 51149289 - 51149392
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||     
T  51149289 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttacggtttgcatctcagcaacctaaccaaaccaaaccaaaccgcaaa 51149388  T
Q  252 aata 255  Q
    ||||    
T  51149389 aata 51149392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 34795011 - 34794923
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    ||||||||||  |||||||||  |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  34795011 gatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 34794923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 4669214 - 4669317
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| ||||||||||||||||||| |||||||||||||| || || |||||||||| |||||||||     
T  4669214 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaaccgcaaa 4669313  T
Q  252 aata 255  Q
    ||||    
T  4669314 aata 4669317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 39098378 - 39098260
Alignment:
Q  238 aaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctctt-----tcgatttttccattgttgcac 332  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||  ||||||| ||     ||||||||| |||||||||||    
T  39098378 aaccgaaccgcaagaataatgaatattacttaaacatgtactaacacaattaaatagctcaagaataatcttttttgaatcgattttttcattgttgcac 39098279  T
Q  333 catcagatttgattctaat 351  Q
    ||||||  |||||||||||    
T  39098278 catcaggattgattctaat 39098260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 33361415 - 33361312
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||  |||| |||||||||||||||||||||| ||||| | ||||||||||||||||||     
T  33361415 gttcggatgagttcggatgacttttagactgaaccgcgcggtttagttcagtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaaccgcaaa 33361316  T
Q  252 aata 255  Q
    ||||    
T  33361315 aata 33361312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 152 - 257
Target Start/End: Original strand, 27641779 - 27641879
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||||||||||||||||||||||||||  |||| | || ||||||||||||||||||||||      |  ||||||||||||||||||||    
T  27641779 gttcggatgaattcagatgacttttgcactgaaccgcgtggtttgatttggtttgcggtttgcatctcagc-----cactaaaccaaaccaaaccgcaag 27641873  T
Q  252 aataat 257  Q
    ||||||    
T  27641874 aataat 27641879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 43030895 - 43030827
Alignment:
Q  195 cggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaacc-aaaccgcaagaataatgaata 262  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  43030895 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaaccgcaagaataatgaata 43030827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 365
Target Start/End: Complemental strand, 43030828 - 43030734
Alignment:
Q  276 tactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaatgcattttcatctct 365  Q
    |||||||| |||||||||||||||  ||||||| |     |||||||||||||||||||||||||||  || ||||||||| | ||| |||||||    
T  43030828 tactagccaaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaagttcgattctaattcctttccatctct 43030734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 42362738 - 42362835
Alignment:
Q  153 ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaa 250  Q
    |||||||| | |||||| | ||||  ||| ||||||| |||| |||| |||||||||||| ||| | | || | ||||||||||||||||||||||||    
T  42362738 ttcggatgcaatcagatcatttttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaactgaatcaaaccaaaccaaaccgcaa 42362835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 39256192 - 39256410
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||  ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  39256192 gttcggatgaatttggatgacttttgcactgaactgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaag 39256291  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||   ||||||| |     |||||||||||||||||||||||||||| || ||||    
T  39256292 aataatgaatattacttaaacatgtactagccaaattacatagctcacgaataatctttttcgattcgatttttccattgttgcaccatcaggttcgatt 39256391  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  39256392 ctaattcctttccatctct 39256410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 152 - 368
Target Start/End: Original strand, 24910610 - 24910831
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||||| |||||||  | ||||||||| ||||| |||||||||||||||| ||||| ||||||||||||||||| |||    
T  24910610 gttcggatgaattcggatgacttttgcattgaaccgtgcagttcggttcagtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccggaag 24910709  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||     ||||||||||| |||||||||||||||| || ||||    
T  24910710 aataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatttttcaattgttgcaccatcaggttcgatt 24910809  T
Q  347 ctaatgcattttcatctctctc 368  Q
    |||||   ||| ||||||||||    
T  24910810 ctaatttctttccatctctctc 24910831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 33910333 - 33910551
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |  | || |||||||||||||||||||||    
T  33910333 gttcggatgaatttggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagtaatcaaaccaaaccaaaccaaaccgcaag 33910432  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||||||| ||||||||||||||||||||| || ||  |||||||||     ||||||||||||| |||||||||||||| || ||||    
T  33910433 aataatgaatattacttaaatatgtactagcccaattacataacttaagaataatctcttttgattcgatttttccaatgttgcaccatcaggttcgatt 33910532  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  33910533 ctaattcttttccatctct 33910551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 153 - 337
Target Start/End: Complemental strand, 11899564 - 11899375
Alignment:
Q  153 ttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaaga 252  Q
    ||||||||||||||||||||||||||||| || |  || ||| |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11899564 ttcggatgaattcagatgacttttgcactaaaacatacagtttggtttgatttgcggtttgcatctcagcaaccgaatcaaaccaaaccaaaccgcaaga 11899465  T
Q  253 ataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatca 337  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||  ||||||| |     || ||||||||||||||||||||||||    
T  11899464 ataatgaatattacttaaatatgtactagctcaattacatagctcaagaataatcttttttgatttgatttttccattgttgcaccatca 11899375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 45692317 - 45692104
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     ||||||| |||||||||||    
T  45692317 gttcggatgaatttggatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccg-----aaccaaaacaaaccgcaag 45692223  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||| ||||||||||||| ||||||||| ||||||||||| |||||  |||||||||     ||| |||||| |||||||||||||| || || ||||    
T  45692222 aataataaatattacttaaatatgtactagtccaattacataactcaagaataatctcttttgattcaattttttcattgttgcaccattaggttcgatt 45692123  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  45692122 ctaattcctttccatctct 45692104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 167 - 318
Target Start/End: Complemental strand, 33474952 - 33474801
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattac 266  Q
    |||||||||||||||||||||| ||||||||||||||||| | ||||||||||| || ||||| ||||||||||||||| |||||||||| |||||||||    
T  33474952 gatgacttttgcactgaaccgcgcggttcggttcggtttgtgatttgcatctcatcaaccgaaccaaaccaaaccaaactgcaagaataacgaatattac 33474853  T
Q  267 ttaaacatgtactagcccaattacatagctcaaagataatctctttcgattt 318  Q
    ||||| |||||||||||||||||||||||||||  ||||||||||| |||||    
T  33474852 ttaaatatgtactagcccaattacatagctcaagaataatctcttttgattt 33474801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 16529048 - 16529266
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||| |||||||| |||| |||||||||||||| || | ||||||||  || ||||||||||||||||||| || || |||||||||||||||||||||    
T  16529048 gttcgtatgaattcggatggcttttgcactgaacagcgcagttcggtttagtatgcggtttgcatctcagcaaccaaaccaaaccaaaccaaaccgcaag 16529147  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| |||  |||||||||     ||||| |||| ||||||||||||||||| || ||||    
T  16529148 aatagtgaatattacttaaacatgtaatagcccaattacatagcccaagaataatctcttttgattcgaatttttcattgttgcaccatcaggttcgatt 16529247  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  16529248 ctaattcctttccatctct 16529266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 51251987 - 51252195
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||||| |||||||| | |||||||| |||||||||||||||||||||||          |||||||||| |||||||    
T  51251987 gttcggatgaattcggatgacttttgcaatgaaccgcgcagttcggtttggtttgcggtttgcatctcagca----------accaaaccaacccgcaag 51252076  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||||||||||||||||||| |||||||||||  ||  |||||||||     ||||||||||||||||||||||||||| ||| ||||    
T  51252077 aataatgaatattacttaaacatgtactagcctaattacatagccaaataataatctcttttgattcgatttttccattgttgcaccatcaaattcgatt 51252176  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  51252177 ctaattcctttccatctct 51252195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 167 - 351
Target Start/End: Complemental strand, 32954585 - 32954401
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattac 266  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||| |||||||||||| |     |||||||||||||||||    
T  32954585 gatgacttttgcactaaaccgcacggttccgttcggttcgcggtttgcatctcagcaaccgaaccaaaccaaaccata-----agaataatgaatattac 32954491  T
Q  267 ttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaat 351  Q
    |||||||||||| ||||||||||||||||||||  ||||| |||     |||||||||||||||||||||||||||| ||  ||||||||    
T  32954490 ttaaacatgtacaagcccaattacatagctcaagaataatttctttcgattcgatttttccattgttgcaccatcaggttcaattctaat 32954401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 1160590 - 1160699
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  1160590 gttcagatgaattcagatgacttttgcactgaaccgcacgattcggttcgatttgcgg-ttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaag 1160688  T
Q  252 aataatgaata 262  Q
    |||||||||||    
T  1160689 aataatgaata 1160699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 5154969 - 5155057
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  5154969 gatgacttttagactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 5155057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 308
Target Start/End: Original strand, 6722384 - 6722529
Alignment:
Q  157 gatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataa 256  Q
    ||||||||  ||||||||||||| |||||    ||||||| |||| ||||||||||||||||||||| |||||     |||||||||||||||||| |||    
T  6722384 gatgaatttggatgacttttgcattgaactttgcggttcgattcgatttgcggtttgcatctcagcaaccgaa-----ccaaaccaaaccgcaaga-taa 6722477  T
Q  257 tgaatattacttaaacatgtactagcccaattacatagctcaaagataatct 308  Q
    |||||||||||||||||||||||  ||||||||||||||||||  |||||||    
T  6722478 tgaatattacttaaacatgtactgacccaattacatagctcaagaataatct 6722529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 156 - 370
Target Start/End: Complemental strand, 44919048 - 44918844
Alignment:
Q  156 ggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    |||||||||| ||| ||||||||||||||| || ||||| |||| ||||||||||||||||||| |||               |||| ||||||||||||    
T  44919048 ggatgaattcggataacttttgcactgaactgcgcggtttggtttggtttgcggtttgcatctctgca---------------accagaccgcaagaata 44918964  T
Q  256 atgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaa 350  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||||||| |     || ||||||||||||||||| ||||||  || ||||||||    
T  44918963 atgaatattacttaaacatgtactagtccaattacatagctcaagaataatcttttttgatttgatttttccattgttgctccatcaagttcgattctaa 44918864  T
Q  351 tgcattttcatctctctcga 370  Q
    | | ||| ||||||| ||||    
T  44918863 ttcttttccatctctttcga 44918844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 8211727 - 8211639
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  8211727 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 8211639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 20494182 - 20494094
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    ||||||||||  |||||||||| |||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  20494182 gatgacttttagactgaaccgcgcggttcggttcgatttgctgtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 20494094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 29707703 - 29707801
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||||||||     ||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  29707703 gttcggatgagttcggatgacttttagactgaaccgcacggt-----tcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 29707797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 29390190 - 29390137
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctca 220  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29390190 gatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctca 29390137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 29389394 - 29389354
Alignment:
Q  311 ttcgatttttccattgttgcaccatcagatttgattctaat 351  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  29389394 ttcgatttttccattgttgcaccatcaggttcgattctaat 29389354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 1160698 - 1160792
Alignment:
Q  276 tactagcccaattacatagctcaaagataatctctttcg-----atttttccattgttgcaccatcagatttgattctaatgcattttcatctct 365  Q
    |||||||| |||||||||||||||  ||||||| |||||     ||||||||||||||||| |||||| |  ||||||||| | ||| |||||||    
T  1160698 tactagccaaattacatagctcaagaataatctttttcgattcaatttttccattgttgcaacatcaggtacgattctaattcctttccatctct 1160792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 13243240 - 13243208
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaa 184  Q
    ||||||||||||||||| |||||||||||||||    
T  13243240 gttcggatgaattcagacgacttttgcactgaa 13243208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 163 - 351
Target Start/End: Complemental strand, 33550838 - 33550645
Alignment:
Q  163 ttcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaata 262  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  33550838 ttcagattacttttgcactgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaaccgcaagaataatgaata 33550739  T
Q  263 ttacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaat 351  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||     |||||||||||||||||||||||||||| || |||||||||    
T  33550738 ttacttaaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccatcaggttcgattctaat 33550645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 35039495 - 35039713
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  35039495 gttcggatgaattcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaaccgcaag 35039594  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||  |||||||||     ||||||||||||||||||||||||||| |||  |||    
T  35039595 aataatgaatgttacttaaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccatcaaattcaatt 35039694  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  35039695 ctaattcctttccatctct 35039713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 13801539 - 13801752
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||| | |||||||||      ||||||||||||||||||||||||| || | ||| |||||||||||||||||||||    
T  13801539 gttcggatgaattcggatgacttttgtattgaaccgca-----tggttcggtttgcggtttgcatctcatcaactgaaccaaaccaaaccaaaccgcaag 13801633  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||     ||| |||||||||||||||||||||||| || ||||    
T  13801634 aataatgaatattacttaaatatgtactagcccaattacatagctcaagaataatctcttttgattcaatttttccattgttgcaccatcaggttcgatt 13801733  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | |||||||||||    
T  13801734 ctaattccttttcatctct 13801752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 167 - 365
Target Start/End: Complemental strand, 10591349 - 10591146
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattac 266  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| || | ||| ||||||||||  ||||||||||||||||||||||||    
T  10591349 gatgacttttgcactgaaccgcgcggttcgattcggtttgcggtttgcgtctcaacaacagaaccaaaccaaactgaaccgcaagaataatgaatattac 10591250  T
Q  267 ttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaatgcattttcat 361  Q
    ||||||||||| |||||||||||||||||||||  ||||| |||     |||||||||| |||||||| |||||||| || ||||||||| ||||| |||    
T  10591249 ttaaacatgtaatagcccaattacatagctcaagaataatgtctttcgattcgattttttcattgttgtaccatcaggttcgattctaattcatttccat 10591150  T
Q  362 ctct 365  Q
    ||||    
T  10591149 ctct 10591146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 351
Target Start/End: Complemental strand, 15860238 - 15860050
Alignment:
Q  167 gatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattac 266  Q
    |||||||||| ||||||||||  ||||||| || ||||||| ||||||| |||| || ||||| ||||||||||||||| |||||||||||||||||||     
T  15860238 gatgacttttacactgaaccgtgcggttcgatttggtttgcagtttgcacctcaccaaccgaaccaaaccaaaccaaactgcaagaataatgaatattaa 15860139  T
Q  267 ttaaacatgtactagcccaattacatagctcaaagataatctctttcgat----ttttccattgttgcaccatcagatttgattctaat 351  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| |||    |||||||||||||||||||||| |  |||||||||    
T  15860138 ttaaacatgtactagcccaattacatagctcaagaataatctcttttgattagattttccattgttgcaccatcagttccgattctaat 15860050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 10390597 - 10390707
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10390597 gttcggatgaattcaaatgacttttgcactgaaccgcgcggttcggttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaag 10390696  T
Q  252 aataatgaata 262  Q
    |||||||||||    
T  10390697 aataatgaata 10390707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 152 - 357
Target Start/End: Complemental strand, 25137669 - 25137460
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| |||||||||||||||||||||| ||||| |||| |||| ||||| ||||||||| || ||||| |||||  ||||||||| |||     
T  25137669 gttcggatgaattcggatgacttttgcactgaaccgcgcggtttggtttggtt-gcggtatgcatctcatcaaccgaaccaaactgaaccaaaccacaat 25137571  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||  |||||||||     |||||||||| || | |||||||||||| ||  |||    
T  25137570 aataatgaatattacttaaacatgtactatcccaattacatagcccaagaataatctcttttgattcgattttttcaatattgcaccatcaggttcaatt 25137471  T
Q  347 ctaatgcattt 357  Q
    ||||| |||||    
T  25137470 ctaattcattt 25137460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 12271008 - 12270905
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  12271008 gttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 12270909  T
Q  252 aata 255  Q
    ||||    
T  12270908 aata 12270905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 5866639 - 5866742
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| ||| |||| |||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  5866639 gttcggatgagttcggatgtcttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 5866738  T
Q  252 aata 255  Q
    ||||    
T  5866739 aata 5866742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 283
Target Start/End: Original strand, 10493964 - 10494079
Alignment:
Q  168 atgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaataatgaatattact 267  Q
    ||||||||||||||||||||    ||||| |||||||||| ||||||||||||||| |  || ||||||||||||||| |||||||||||   | |||||    
T  10493964 atgacttttgcactgaaccgtgtagttcgattcggtttgcagtttgcatctcagcaactaaaccaaaccaaaccaaactgcaagaataatcgttgttact 10494063  T
Q  268 taaacatgtactagcc 283  Q
    ||||| ||||||||||    
T  10494064 taaacttgtactagcc 10494079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 10390709 - 10390801
Alignment:
Q  279 tagcccaattacatagctcaaaga-taatctctttcgatt-----tttccattgttgcaccatcagatttgattctaatgcattttcatctct 365  Q
    ||||| |||||| ||||||||||| |||||| ||||||||     |||||||||||||||||||||||| |||| |||| | ||| |||||||    
T  10390709 tagccaaattacgtagctcaaagaataatctttttcgattcaatttttccattgttgcaccatcagattcgattttaattcctttccatctct 10390801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 156 - 365
Target Start/End: Original strand, 69096 - 69310
Alignment:
Q  156 ggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    |||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||    
T  69096 ggatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaagaata 69195  T
Q  256 atgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattctaa 350  Q
    |||||||||||||||||||||||||||| ||||||||||| |||  |||||||||     ||||||||||||||||||||||||||| ||| ||||||||    
T  69196 atgaatattacttaaacatgtactagcctaattacatagcccaataataatctcttttgattcgatttttccattgttgcaccatcaaattcgattctaa 69295  T
Q  351 tgcattttcatctct 365  Q
    | | ||| |||||||    
T  69296 ttcctttccatctct 69310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 156 - 348
Target Start/End: Original strand, 77202 - 77399
Alignment:
Q  156 ggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaagaata 255  Q
    |||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||    
T  77202 ggatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaagaata 77301  T
Q  256 atgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgattct 348  Q
    |||||||||||||||||||||||||||| ||||||||||| |||  |||||| ||     ||||||||||||||||||||||||||| ||| ||||||    
T  77302 atgaatattacttaaacatgtactagcctaattacatagcccaataataatcacttttgattcgatttttccattgttgcaccatcaaattcgattct 77399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 106561 - 106343
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||||| || ||||| |||||| |||||| |||||||    
T  106561 gttcggatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcaacaaccgaaccaaacccaaccaacccgcaag 106462  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    |||||||||||||||||||||||||||||||| |||||||||||  ||  ||||| |||     ||||||||||||||||||||||||||| ||| ||||    
T  106461 aataatgaatattacttaaacatgtactagcctaattacatagcctaataataatttctttttattcgatttttccattgttgcaccatcaaattcgatt 106362  T
Q  347 ctaatgcattttcatctct 365  Q
    ||||| | ||| |||||||    
T  106361 ctaattcctttccatctct 106343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 129089 - 128950
Alignment:
Q  231 caaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccatt 325  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  |||||||||     |||||||||||||||    
T  129089 caaaccaaaccaacccgcaagaataatgaatattacttaaacatgtactagcctaattacatagcccaataataatctctttatattcgatttttccatt 128990  T
Q  326 gttgcaccatcagatttgattctaatgcattttcatctct 365  Q
    |||||||||||| ||| ||||||||| | ||| |||||||    
T  128989 gttgcaccatcaaattcgattctaattcctttccatctct 128950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 47327 - 47545
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||||||||||||||| || |||||| |||||| ||||| ||||||| || ||||| |||||||||||||||| ||||    
T  47327 gttcggatgaattcggatgacttttgcactgaaccgcatggctcggtttggtttgtggttttcatctcaacaaccgaaccaaaccaaaccaaaccacaag 47426  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||| |||     |||||||| |||||||||||| |||||| ||  |||    
T  47427 aataatgaatattacttaaacatctactagcccaattacatagctcaagaataatttcttttgattcgatttgtccattgttgcaacatcaggttccatt 47526  T
Q  347 ctaatgcattttcatctct 365  Q
    |||||  |||| |||||||    
T  47527 ctaatttatttccatctct 47545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 152 - 365
Target Start/End: Original strand, 40131 - 40349
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||||||| ||||||||||||||||||||||  || |||||| |||||| ||||| ||||||| || ||||| |||||||||||||||| ||||    
T  40131 gttcggatgaattcggatgacttttgcactgaaccgcgtggctcggtttggtttgtggttttcatctcaacaaccgaaccaaaccaaaccaaaccacaag 40230  T
Q  252 aataatgaatattacttaaacatgtactagcccaattacatagctcaaagataatctct-----ttcgatttttccattgttgcaccatcagatttgatt 346  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||| |||     ||| |||| |||||||||||| |||||| ||  |||    
T  40231 aataatgaatattacttaaacatctactagcccaattacatagctcaagaataatttcttttgattcaatttgtccattgttgcaacatcaggttccatt 40330  T
Q  347 ctaatgcattttcatctct 365  Q
    |||||  |||| |||||||    
T  40331 ctaatttatttccatctct 40349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 5474 - 5577
Alignment:
Q  152 gttcggatgaattcagatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcagccgaatcaaaccaaaccaaaccgcaag 251  Q
    |||||||||| |||  |||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||     
T  5474 gttcggatgagttcgaatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaa 5573  T
Q  252 aata 255  Q
    ||||    
T  5574 aata 5577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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