View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19642_low_9 (Length: 331)
Name: NF19642_low_9
Description: NF19642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19642_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 42613892 - 42614205
Alignment:
| Q |
1 |
atttatgtgaaaagttgcaaaaactaggctgcacttagtctagtttgttttgataaagttcaagaatttgggttctatcatttgtaccgatcttttgtct |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42613892 |
atttatgttaaaagttgcaaaaactaggctgcacttagtctagtttgttttgataaagttcaagaatttgggttctatcatttgtaccgatcttttgtct |
42613991 |
T |
|
| Q |
101 |
tctggtgaatgaattactttgttgcaagagaaaaataccaaatcaatcattcactcaactcaaagaataagagaatagacatatagttgagtatactcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42613992 |
tctggtgaatgaattactttgttgcaagagaaaaataccaaatcaatcattcactcaactcaaagaataagagaatagacatatagttgagtatactcac |
42614091 |
T |
|
| Q |
201 |
tctctctttagcaaaatataagaaaaaactatatatatagtccaaatttaaatcaaatgcaagtatgttttttacttatatttttgtaaatgataaaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42614092 |
tctctctttagcaaaatataagaaaaaactatatatatagtccaaatttaaatcaaatgcaagtatgttttttacttatatttttgtaaatgataaaact |
42614191 |
T |
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| Q |
301 |
tgcaagaagaatat |
314 |
Q |
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|||||||||||||| |
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| T |
42614192 |
tgcaagaagaatat |
42614205 |
T |
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