View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19643_high_10 (Length: 239)
Name: NF19643_high_10
Description: NF19643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19643_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 15375154 - 15375358
Alignment:
| Q |
18 |
aattgcacccttagactaggttttgtagtggacttgatagagttcttttttctacctcttagtaagttaaggcgtaaattgttctgtaggctcctccgtc |
117 |
Q |
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| T |
15375154 |
aattgcacccttagactgggttttgtaatggacttgatagagttcttttttctacctcttagtaagttaaggcgtaaat-gttctaaaggctcctccgtc |
15375252 |
T |
|
| Q |
118 |
tctggaggcaaaaatctgtcgtatcaaattgatgtccttctgcaaaactgggcatatgggggttgctgcatgttatgagtatccagagcggtttcctgtg |
217 |
Q |
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||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15375253 |
tctggaggcaaaatt-tgtcgtatcaaattgatgtccttctacaaaactgggcatatgggggctgctgcatgttatgagtatccagagcggtttcctgtg |
15375351 |
T |
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| Q |
218 |
aggatat |
224 |
Q |
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||||||| |
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| T |
15375352 |
aggatat |
15375358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 28299254 - 28299458
Alignment:
| Q |
18 |
aattgcacccttagactaggttttgtagtggacttgatagagttcttttttctacctcttagtaagttaaggcgtaaattgttctgtaggctcctccgtc |
117 |
Q |
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|||| |||||||||| ||||||| ||| ||| ||||||||||||||||| | || || ||| ||||| |||||||||| ||||||||||||| | |
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| T |
28299254 |
aattacacccttagatcaggttttttaggaaactcgatagagttcttttttccgcttcatactaaaataaggtgtaaattgttttgtaggctcctccacc |
28299353 |
T |
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| Q |
118 |
tctggaggcaaaaatctgtcgtatcaaattgatgtccttctgcaaaactgggcatatggg-ggttgctgcatgttatgagtatccagagcggtttcctgt |
216 |
Q |
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|||||| ||||||| || |||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||| || | ||||| ||| |
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| T |
28299354 |
tctggatccaaaaat-tgccgtaacaaattgatatccttctgcaaaactgggtatatgggcggttgctgcatgttttgagtatctggaacagtttcatgt |
28299452 |
T |
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| Q |
217 |
gaggat |
222 |
Q |
| |
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|||||| |
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| T |
28299453 |
gaggat |
28299458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 28512819 - 28512615
Alignment:
| Q |
18 |
aattgcacccttagactaggttttgtagtggacttgatagagttcttttttctacctcttagtaagttaaggcgtaaattgttctgtaggctcctccgtc |
117 |
Q |
| |
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|||| |||||||||| ||||||| ||| ||| ||||||||||||||||| | || || ||| ||||| |||||||||| ||||||||||||| | |
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| T |
28512819 |
aattacacccttagatcaggttttttaggaaactcgatagagttcttttttccgcttcatactaaaataaggtgtaaattgttttgtaggctcctccacc |
28512720 |
T |
|
| Q |
118 |
tctggaggcaaaaatctgtcgtatcaaattgatgtccttctgcaaaactgggcatatggg-ggttgctgcatgttatgagtatccagagcggtttcctgt |
216 |
Q |
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|||||| ||||||| || |||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||| || | ||||| ||| |
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| T |
28512719 |
tctggatccaaaaat-tgccgtaacaaattgatatccttctgcaaaactgggtatatgggcggttgctgcatgttttgagtatctggaacagtttcatgt |
28512621 |
T |
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| Q |
217 |
gaggat |
222 |
Q |
| |
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|||||| |
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| T |
28512620 |
gaggat |
28512615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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