View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19643_high_2 (Length: 458)
Name: NF19643_high_2
Description: NF19643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19643_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 133; Significance: 6e-69; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 197 - 451
Target Start/End: Complemental strand, 13050921 - 13050652
Alignment:
| Q |
197 |
atgcacttttcatctgtcct-----cctgtggcagaaaatggatttgaa--------gtcactcgttgaagcgctgtatggtcttagta-atgggatcgt |
282 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| | |||||||||| |
|
|
| T |
13050921 |
atgcacttttcatctgtcctagtatcctgtggcagaaaatggatttgaatttcaggagtcacttgttgaagcgctatatggtcttagcatatgggatcgt |
13050822 |
T |
|
| Q |
283 |
ttgcaagcatcggtaaacgttttgaaaatgcttactgagtagaactctgcaggttgcaacaagaaggagaaatgactaatcacgttagggcggttaatgt |
382 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
13050821 |
ttgcaagcattggtaaacgttttgaaaatgcttactgagcagaactctacaggtggcaataagaaggagaaatgactaatcatgttaggttggttgatgt |
13050722 |
T |
|
| Q |
383 |
gccaactggttaatagtcacattcgaataatatggggcttct-gtttgtctccaactactacctatgcta |
451 |
Q |
| |
|
| |||||||||||| ||||||||| ||||||| ||||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
13050721 |
gacaactggttaattgtcacattcaaataatacggggcttctggtttgtctccaactgctacctgtgcta |
13050652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 9014815 - 9014895
Alignment:
| Q |
28 |
tatgcttcagcaactgcttactagattcatctgtgcatttgacttataggcatttggacctagcatgatgccttgtaaagt |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9014815 |
tatgctccagcaactgcttactagattcatctgtgcacttgacttataggcatttggacctagaatgatgccttgtaaagt |
9014895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 13051764 - 13051690
Alignment:
| Q |
20 |
ctatcgtgtatgcttcagcaactgcttactagattcatctgtgcatttgacttataggcatttggacctagcatg |
94 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13051764 |
ctatcttgtatgctccaacaactgcttactagattcatctgtgcatttgacttataggcatttggacctatcatg |
13051690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 13051062 - 13050953
Alignment:
| Q |
89 |
agcatgatgccttgtaaagttagt-gttgaagatagatggtggccattcatcaagacctagataccgcagcatattcaggccagtctagaaaaccctaca |
187 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||| ||||||| ||| |||||||| | ||||| |||||| | || |
|
|
| T |
13051062 |
agcatgctgccttgtaaagtcagtagttgaagatagatggtggccattcattaagaccaagataccaaagcctattcaggtctgtctaaaaaacctttca |
13050963 |
T |
|
| Q |
188 |
taatatcata |
197 |
Q |
| |
|
| |||||||| |
|
|
| T |
13050962 |
ttatatcata |
13050953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University