View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19643_high_3 (Length: 453)

Name: NF19643_high_3
Description: NF19643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19643_high_3
NF19643_high_3
[»] chr2 (3 HSPs)
chr2 (1-443)||(45229625-45230068)
chr2 (4-41)||(4027119-4027156)
chr2 (1-41)||(15370239-15370279)
[»] chr4 (6 HSPs)
chr4 (1-43)||(54426157-54426199)
chr4 (3-38)||(20935943-20935978)
chr4 (1-41)||(26781-26821)
chr4 (1-41)||(21731572-21731612)
chr4 (1-41)||(38478826-38478866)
chr4 (1-41)||(44797994-44798034)
[»] chr6 (3 HSPs)
chr6 (1-39)||(10016737-10016775)
chr6 (1-38)||(4163267-4163304)
chr6 (1-38)||(4224888-4224925)
[»] chr3 (3 HSPs)
chr3 (3-41)||(47132432-47132470)
chr3 (1-41)||(46886608-46886648)
chr3 (1-41)||(53762310-53762350)
[»] chr1 (4 HSPs)
chr1 (4-41)||(14576570-14576607)
chr1 (1-41)||(2295210-2295250)
chr1 (1-41)||(14385709-14385749)
chr1 (1-41)||(38247441-38247481)
[»] chr8 (1 HSPs)
chr8 (1-41)||(30251370-30251410)
[»] chr5 (1 HSPs)
chr5 (1-41)||(15246947-15246987)


Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 45229625 - 45230068
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggcatcaagcctcaaagaagattgcccctcaattaactttactttgaaattattaataaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45229625 tatgccagtagataagctcaaatcaaccaatccaaacaggcatcaagcctcaaagaagattgcccctcaattaactttactttgaaattattaataaacg 45229724  T
Q  101 agaaagaaaatgccattttatttctacaataagaaaactttaggtggtccaggacttaccagttcagggtaggccttaaggattatagcagattacaccg 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45229725 agaaagaaaatgccattttttttctacaataagaaaactttaggtggtccaggacttaccagttcagggtaggccttaaggattatagcagattgcaccg 45229824  T
Q  201 ccaacaagtcccaatgctggcggagttgaacttacgtctttgtgggggtacgactcattgctatgtttgacattgattactggcagctctttttaatcaa 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45229825 ccaacgagtcccaatgctggcggagttgaacttacgtctttgtgggggtacgactcattgctatgtttgacattgattactggcagctctttttaatcaa 45229924  T
Q  301 gagttgaactttctgtaaatttttgtaattttatattttatctggttctaatggttattccctatgtaattaaagataatttacttggtgcttttcagtt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45229925 gagttgaactttctgtaaatttttgtaattttatattttatctggatctaatggttattccctatgtaattaaagataatttacttagtgcttttcagtt 45230024  T
Q  401 tcatcatttactttaa-gctaaaatgcacttttggctccctatg 443  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  45230025 tcatcatttactttaaggctaaaatgcacttttggctccctatg 45230068  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 4027119 - 4027156
Alignment:
Q  4 gccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  4027119 gccagtagataagctcaaatgaaccaatccaaataggc 4027156  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15370279 - 15370239
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    ||||||||||||||||||||||| |  ||||||||||||||    
T  15370279 tatgccagtagataagctcaaataagtcaatccaaacaggc 15370239  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 54426157 - 54426199
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggcat 43  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  54426157 tatgccagtagataagctcaaataagccaatccaaacaggcat 54426199  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 20935978 - 20935943
Alignment:
Q  3 tgccagtagataagctcaaatcaaccaatccaaaca 38  Q
    ||||||||||||||||||||| ||||||||||||||    
T  20935978 tgccagtagataagctcaaataaaccaatccaaaca 20935943  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26821 - 26781
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    ||||||||| ||||||||||||| | |||||||||||||||    
T  26821 tatgccagttgataagctcaaataagccaatccaaacaggc 26781  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21731612 - 21731572
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    |||| ||||||||| |||||||| |||||||||||||||||    
T  21731612 tatgtcagtagatatgctcaaataaaccaatccaaacaggc 21731572  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38478826 - 38478866
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    |||||||||||||| |||||||| | |||||||||||||||    
T  38478826 tatgccagtagatatgctcaaataagccaatccaaacaggc 38478866  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44797994 - 44798034
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    |||| ||||||||||||| |||||| |||||||||||||||    
T  44797994 tatgtcagtagataagcttaaatcagccaatccaaacaggc 44798034  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10016737 - 10016775
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacag 39  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10016737 tatgcctgtagataagctcaaataaaccaatccaaacag 10016775  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4163267 - 4163304
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  4163267 tatgccagtagataagctcaaataagccaatccaaaca 4163304  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4224888 - 4224925
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaaca 38  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  4224888 tatgccagtagataagctcaaataagccaatccaaaca 4224925  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 47132432 - 47132470
Alignment:
Q  3 tgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  47132432 tgccagtagataagctcaaataagccaatccaaacaggc 47132470  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46886648 - 46886608
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    |||||||| |||||||||||||| ||||||||||| |||||    
T  46886648 tatgccagcagataagctcaaataaaccaatccaagcaggc 46886608  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 53762350 - 53762310
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    ||||| ||||||||||||||||| ||||||||||| |||||    
T  53762350 tatgctagtagataagctcaaataaaccaatccaagcaggc 53762310  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 14576607 - 14576570
Alignment:
Q  4 gccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    |||||||||||||||||||| | |||||||||||||||    
T  14576607 gccagtagataagctcaaataagccaatccaaacaggc 14576570  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2295210 - 2295250
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  2295210 tatgccagtagataagctcaaataagccaattcaaacaggc 2295250  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14385749 - 14385709
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    ||||||||||||||||||||||| | ||||||| |||||||    
T  14385749 tatgccagtagataagctcaaataagccaatccgaacaggc 14385709  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38247441 - 38247481
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    |||||||||||||||| |||||| | |||||||||||||||    
T  38247441 tatgccagtagataagttcaaataacccaatccaaacaggc 38247481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30251410 - 30251370
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  30251410 tatgtcagtagataagctcaaataagccaatccaaacaggc 30251370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15246947 - 15246987
Alignment:
Q  1 tatgccagtagataagctcaaatcaaccaatccaaacaggc 41  Q
    |||| |||||||||||||||||| ||| |||||||||||||    
T  15246947 tatgtcagtagataagctcaaataaacaaatccaaacaggc 15246987  T

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