View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19643_high_4 (Length: 445)
Name: NF19643_high_4
Description: NF19643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19643_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 35245946 - 35246297
Alignment:
| Q |
11 |
taattctcatcagaaaagcaacagaagaactttttattgatgtggggcataggatccagcaaaagtaattgactaatgacatgaaaattgatttaaagtt |
110 |
Q |
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| T |
35245946 |
taattctcagaagaaaagcaacagaagaa------attgatgtagggaataggatccatcaaaattaattgactactcacatgaaaattgatttaaagtt |
35246039 |
T |
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| Q |
111 |
ctcttagatgaagatcatgtaaaaccaattattggacattaacagatccgaaagacagactgctgcatcacaatgcatgaagttaaagaaaaagaacaga |
210 |
Q |
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| T |
35246040 |
ctcttagctgaagatcatgtaaagccaattattggacattgacagatccgaaagacagactgatgcatcacagttcatgaggttaaagaaaaagaacaga |
35246139 |
T |
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| Q |
211 |
catatagaataaggaacatattcaaaatcagaaaaatcaaagttggttttatttttt---aagtaaaaacactttggatacaaatggtcgaccctagatt |
307 |
Q |
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| T |
35246140 |
catatagaataaggaacatattctaaatcagaaaaatcgaagttggttttattttttaagaagtaaaaatactttggagacaaatggtcaactctagatt |
35246239 |
T |
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| Q |
308 |
tatttgaaaatgaattacagaggaaatgctagaaaatggggaattgagtccacaacat |
365 |
Q |
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| T |
35246240 |
tatttgaaaatggattacagaggaaatgccagaaaatggggaattgagtacacaacat |
35246297 |
T |
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