View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19643_high_5 (Length: 350)
Name: NF19643_high_5
Description: NF19643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19643_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 32379780 - 32380113
Alignment:
| Q |
1 |
agagaaagataaagaatggtgaagaatggagtcttacagcatatgcaatggcgtagccatcaaaagtgcttgttccccgacccaattcatcaaggataac |
100 |
Q |
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| T |
32379780 |
agagaaagataaagaatggtgaagaatggagtcttacagcatatgcaatggcgtagccatcaaaagtgcttgttccccgacccaattcatcaaggataac |
32379879 |
T |
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| Q |
101 |
aagagaatcttgagtagcattatgaagcactgatgcagtttctgtacactcaataaagaaggtacctaaaaacaaaaacatagttcattagaatcgcaaa |
200 |
Q |
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| T |
32379880 |
aagagaatcttgagtagcattatgaagcactgatgcagtttctgtacactcaataaagaaggtacctaaaaacaaaaacatagttcattagaatcgcaaa |
32379979 |
T |
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| Q |
201 |
gccataaattcatgaggtaaactgcatgactacacattgaaatattttagaaccacaatcctgaatttcaaagtgctgaaaatctctattggaaaaattg |
300 |
Q |
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| T |
32379980 |
gccataaattcatgaggtaaactgcatgactacacattgaaatattttagaaccacaatcctgaatttcaaagtgctgaaaatctctattggaaaaattg |
32380079 |
T |
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| Q |
301 |
atggatgggcaacacctctaatataacaataaat |
334 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
32380080 |
atggatgagcaacacctctaatataacaataaat |
32380113 |
T |
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