View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19643_low_1 (Length: 585)

Name: NF19643_low_1
Description: NF19643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19643_low_1
NF19643_low_1
[»] chr5 (6 HSPs)
chr5 (29-569)||(2935176-2935730)
chr5 (322-396)||(10142070-10142144)
chr5 (302-360)||(43541899-43541958)
chr5 (323-366)||(43405435-43405478)
chr5 (325-378)||(27592549-27592602)
chr5 (325-378)||(30325971-30326024)
[»] chr8 (1 HSPs)
chr8 (271-392)||(34861226-34861351)
[»] chr1 (7 HSPs)
chr1 (304-411)||(28218123-28218233)
chr1 (322-396)||(2225236-2225310)
chr1 (321-396)||(41958095-41958170)
chr1 (250-366)||(15468262-15468387)
chr1 (323-396)||(1093168-1093241)
chr1 (264-301)||(51732393-51732430)
chr1 (322-378)||(41095703-41095759)
[»] chr3 (4 HSPs)
chr3 (306-393)||(138778-138866)
chr3 (325-396)||(46450077-46450148)
chr3 (246-303)||(48351550-48351607)
chr3 (301-348)||(41707511-41707559)
[»] scaffold0018 (1 HSPs)
scaffold0018 (322-377)||(27843-27898)
[»] chr7 (7 HSPs)
chr7 (304-378)||(7775030-7775105)
chr7 (323-378)||(44511031-44511086)
chr7 (310-396)||(8073369-8073458)
chr7 (322-397)||(22189948-22190025)
chr7 (304-409)||(6442162-6442270)
chr7 (322-367)||(12263530-12263575)
chr7 (304-348)||(32605391-32605436)
[»] chr4 (2 HSPs)
chr4 (335-378)||(1559824-1559867)
chr4 (304-408)||(47009187-47009294)
[»] chr6 (2 HSPs)
chr6 (325-378)||(4595772-4595825)
chr6 (323-396)||(34905346-34905421)
[»] chr2 (1 HSPs)
chr2 (324-360)||(38464211-38464247)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 29 - 569
Target Start/End: Complemental strand, 2935730 - 2935176
Alignment:
Q  29 caagtgaacgatggtgatggagtttcatgggtggagaattacactgcttcccgtccggtaaaaatacacactttaggaaacatttgactatttaagagta 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2935730 caagtgaacgatggtgatggagtttcatgggtggagaattacactgcttcccgtccggtaaaaatacacactttaggaaacatttgactatttaagagta 2935631  T
Q  129 tttgtaaaaatatgtttaatgagtgcaggcaaccttttctttgaaggagagtggcaacctaactcgctctacttatgtaaaatagtttgctttttattat 228  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2935630 tttgtaaaaatatgtttaacgagtgtaggcaaccttttctttgaaggagagtggcaacctaactcgctctacttatgtaaaatagtttgcattttattat 2935531  T
Q  229 gttt-------------tttgaggaataatacattctcttttgagcaatttctcaaatactcactcttttattgatttaaattattatactttaaaaatt 315  Q
    ||||             ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  2935530 gtttccacatgtaatgctttgaggaataatacattctcttttgaacaatttctctaatactcactcttttattggtttaaattattatactttgaaaatt 2935431  T
Q  316 gaattccacaaagtgatgagacatacattgattcca-ttcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtttttaaccttcctctcctc 414  Q
    ||||||||||||  ||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  2935430 gaattccacaaaccgatgagacatacattaattccattttaataaataagtgggtgctaaagagtgtcgaaaagtgagtgtttttaaccttcctcttctc 2935331  T
Q  415 tgagatctatgttgcctttaaagaatcgtgaacgatttatccaacnnnnnnntattattcatgtcttgcatgtgacccataaacatctttttaatctatg 514  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||         || ||||||||||||||| ||||||||||||||| ||||||||||||    
T  2935330 tgaaatctatgttgcctttaaagaatcgtgaacgatttatctaataaaaagagatgattcatgtcttgcatatgacccataaacatc-ttttaatctatg 2935232  T
Q  515 ttaatttcatgtttctcttataatcaaatcaacacttgaattga-acatatgatac 569  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2935231 ttaatttcatgtttctcttataatcaaatcaacacttgaattgacacatatgatac 2935176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 322 - 396
Target Start/End: Original strand, 10142070 - 10142144
Alignment:
Q  322 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 396  Q
    ||||||||| || ||||||||||||||  || ||||||| ||||| |||||| ||||||| ||||||||||||||    
T  10142070 cacaaagtggtgggacatacattgattttatccaataaaagagtgagtgctatagagtgttgaaaaatgagtgtt 10142144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 43541958 - 43541899
Alignment:
Q  302 atactttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaa 360  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||  ||||||||||    
T  43541958 atactttgaaaattgaactcacacaaagtgatgagacatacattgattttattcaataaa 43541899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 43405478 - 43405435
Alignment:
Q  323 acaaagtgatgagacatacattgattccattcaataaatgagtg 366  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||    
T  43405478 acaaagtggtgagacatacattgatttcattcaataaaagagtg 43405435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 27592549 - 27592602
Alignment:
Q  325 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 378  Q
    |||||| ||||||||||||||||| ||| |||||||  |||| |||||||||||    
T  27592549 aaagtggtgagacatacattgatttcatccaataaaatagtgagtgctaaagag 27592602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 30325971 - 30326024
Alignment:
Q  325 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 378  Q
    |||||| ||||||||||||||||| ||| |||||||  |||| |||||||||||    
T  30325971 aaagtggtgagacatacattgatttcatccaataaaatagtgagtgctaaagag 30326024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 271 - 392
Target Start/End: Original strand, 34861226 - 34861351
Alignment:
Q  271 aatactcactcttttattgatttaaattattat---actttaaaaattgaat-tccacaaagtgatgagacatacattgattccattcaataaatgagtg 366  Q
    |||||||||||| |||||| ||||||||||| |   ||||| |||||||||  | ||||||||| || |||||||||||||| ||| ||||||| |||||    
T  34861226 aatactcactctcttattggtttaaattattgtgggactttgaaaattgaacctacacaaagtggtgggacatacattgatttcatccaataaaagagtg 34861325  T
Q  367 ggtgctaaagagtgtcgaaaaatgag 392  Q
     |||||| ||||||| ||||| ||||    
T  34861326 agtgctagagagtgttgaaaagtgag 34861351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 28218123 - 28218233
Alignment:
Q  304 actttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaa--agagtgtcgaaaaatgagtgttttta 400  Q
    ||||| |||||||||| | ||||||||| ||||||||||||||||| ||| ||||||| |||||  ||||||  |||| || ||||||||||||||  ||    
T  28218123 actttgaaaattgaatccacacaaagtggtgagacatacattgatttcatccaataaaagagtgaatgctaaagagagggttgaaaaatgagtgttgcta 28218222  T
Q  401 accttcctctc 411  Q
    |||||||||||    
T  28218223 accttcctctc 28218233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 322 - 396
Target Start/End: Complemental strand, 2225310 - 2225236
Alignment:
Q  322 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 396  Q
    ||||||||| || |||||||||||||| ||| ||||||| |||||||||||| ||||||| ||||| ||||||||    
T  2225310 cacaaagtggtgggacatacattgatttcatccaataaaagagtgggtgctagagagtgttgaaaattgagtgtt 2225236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 41958170 - 41958095
Alignment:
Q  321 ccacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 396  Q
    ||||||| || || |||||||||||||| ||| ||||||||||||| |||||  ||||||| ||||| ||||||||    
T  41958170 ccacaaaatggtgggacatacattgatttcatccaataaatgagtgagtgcttgagagtgttgaaaagtgagtgtt 41958095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 366
Target Start/End: Complemental strand, 15468387 - 15468262
Alignment:
Q  250 tctcttttgagcaatttctcaaatactcactcttttattgatttaaattat--------tatactttaaaaattgaattc-cacaaagtgatgagacata 340  Q
    |||||||||| || | ||||||||||| ||||||||||| |||||||||||        || ||| | |||||||||  | |||||||| ||||||||||    
T  15468387 tctcttttgaacactatctcaaatacttactcttttattaatttaaattattgtgggtctacactatgaaaattgaacccacacaaagtaatgagacata 15468288  T
Q  341 cattgattccattcaataaatgagtg 366  Q
    ||||||||| ||| |||||| |||||    
T  15468287 cattgattctatttaataaaagagtg 15468262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 396
Target Start/End: Original strand, 1093168 - 1093241
Alignment:
Q  323 acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 396  Q
    |||||||| ||  ||||||||||||| |||  |||||| ||||| ||||||||||||||  |||||| ||||||    
T  1093168 acaaagtggtggaacatacattgatttcatctaataaacgagtgcgtgctaaagagtgtgcaaaaataagtgtt 1093241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 51732430 - 51732393
Alignment:
Q  264 tttctcaaatactcactcttttattgatttaaattatt 301  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  51732430 tttctctaatactcactcttttattggtttaaattatt 51732393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 41095703 - 41095759
Alignment:
Q  322 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 378  Q
    |||| ||||||| |||||||||||||| ||  ||||||||||||| |||||| ||||    
T  41095703 cacagagtgatgggacatacattgatttcacccaataaatgagtgagtgctagagag 41095759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 393
Target Start/End: Complemental strand, 138866 - 138778
Alignment:
Q  306 tttaaaaattgaattcc-acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagt 393  Q
    |||||||||||||| |  ||||| || ||||||||||||||||| ||||||||||| ||||| |||||| ||||| | ||||| |||||    
T  138866 tttaaaaattgaatacatacaaaatggtgagacatacattgatttcattcaataaaagagtgagtgctagagagtcttgaaaactgagt 138778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 46450148 - 46450077
Alignment:
Q  325 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagagtgtcgaaaaatgagtgtt 396  Q
    |||||| || ||||||||||||||||||  |||||| ||||| |||||| |||||||  |||| ||||||||    
T  46450148 aaagtggtgggacatacattgattccatctaataaaagagtgagtgctagagagtgttcaaaagtgagtgtt 46450077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 48351607 - 48351550
Alignment:
Q  246 acattctcttttgagcaatttctcaaatactcactcttttattgatttaaattattat 303  Q
    |||||||||||||| || |||||| |||||||  ||| |||||||||||||| |||||    
T  48351607 acattctcttttgaacattttctctaatactctttctcttattgatttaaatcattat 48351550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 41707511 - 41707559
Alignment:
Q  301 tatactttaaaaattgaattc-cacaaagtgatgagacatacattgatt 348  Q
    ||||||||||||||||||  | ||||||||||||| |||||||||||||    
T  41707511 tatactttaaaaattgaacccacacaaagtgatgaaacatacattgatt 41707559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 27898 - 27843
Alignment:
Q  322 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaaga 377  Q
    ||||||||| || |||||||||||||||||| ||||||| | ||| ||||||||||    
T  27898 cacaaagtggtgggacatacattgattccatccaataaaagcgtgagtgctaaaga 27843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 7775105 - 7775030
Alignment:
Q  304 actttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 378  Q
    ||||| ||||||||| || ||||||||| || |||||||||||||| ||| ||||||| ||||| |||||| ||||    
T  7775105 actttgaaaattgaactcacacaaagtggtgggacatacattgatttcatccaataaaagagtgagtgctatagag 7775030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 44511031 - 44511086
Alignment:
Q  323 acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 378  Q
    |||||||||||||||||||||||||| ||| |||||||  |||| |||||| ||||    
T  44511031 acaaagtgatgagacatacattgatttcatccaataaaaaagtgagtgctagagag 44511086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 8073369 - 8073458
Alignment:
Q  310 aaaattgaa-ttccacaaagtgatgagacatacattgattccattcaataaatgagtgggtgcta--aagagtgtcgaaaaatgagtgtt 396  Q
    ||||||||| || ||||||||| || |||||||||||||| ||| | ||||| ||||| ||||||  |||| ||| ||||||||||||||    
T  8073369 aaaattgaacttacacaaagtggtgggacatacattgatttcatccgataaaagagtgagtgctaggaagaatgttgaaaaatgagtgtt 8073458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 397
Target Start/End: Complemental strand, 22190025 - 22189948
Alignment:
Q  322 cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgct--aaagagtgtcgaaaaatgagtgttt 397  Q
    ||||||||| || | |||||||||||| ||| ||||||| ||||| |||||  | ||||||| |||||||||||||||    
T  22190025 cacaaagtggtgggccatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaaatgagtgttt 22189948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 409
Target Start/End: Complemental strand, 6442270 - 6442162
Alignment:
Q  304 actttaaaaattgaattcc-acaaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag--tgtcgaaaaatgagtgttttta 400  Q
    ||||| |||||||||| || ||||| || ||  ||||||||||||| ||| |||||||||| || ||| || ||||  ||| |||||||||||||| |||    
T  6442270 actttgaaaattgaatccccacaaaatggtggaacatacattgatttcatacaataaatgactgagtgatagagagagtgttgaaaaatgagtgttgtta 6442171  T
Q  401 accttcctc 409  Q
    || ||||||    
T  6442170 acattcctc 6442162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 367
Target Start/End: Original strand, 12263530 - 12263575
Alignment:
Q  322 cacaaagtgatgagacatacattgattccattcaataaatgagtgg 367  Q
    |||||||||||| |||||||||||||||||| | ||||| ||||||    
T  12263530 cacaaagtgatgggacatacattgattccatccgataaaagagtgg 12263575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 32605436 - 32605391
Alignment:
Q  304 actttaaaaattgaattc-cacaaagtgatgagacatacattgatt 348  Q
    |||||||||||||||| | |||||||| ||||||||||||||||||    
T  32605436 actttaaaaattgaatccacacaaagtaatgagacatacattgatt 32605391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 1559824 - 1559867
Alignment:
Q  335 gacatacattgattccattcaataaatgagtgggtgctaaagag 378  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||    
T  1559824 gacatacgttgattccattcaataaaggagtgagtgctaaagag 1559867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 408
Target Start/End: Complemental strand, 47009294 - 47009187
Alignment:
Q  304 actttaaaaattgaattc-cacaaagtgatgagacatacattgattccattcaataaatgagtgggtgcta--aagagtgtcgaaaaatgagtgttttta 400  Q
    ||||| ||||||||| || ||||||| | ||||||| ||||| |||  || ||||||| ||||| ||||||  |||||||| ||||||||||| || |||    
T  47009294 actttgaaaattgaactcacacaaagcggtgagacaaacattaattttatccaataaaagagtgagtgctagaaagagtgttgaaaaatgagttttgtta 47009195  T
Q  401 accttcct 408  Q
    || |||||    
T  47009194 acattcct 47009187  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 4595825 - 4595772
Alignment:
Q  325 aaagtgatgagacatacattgattccattcaataaatgagtgggtgctaaagag 378  Q
    |||||| ||||||||||||||||| || |||||||| ||||| |||||| ||||    
T  4595825 aaagtggtgagacatacattgatttcactcaataaaagagtgagtgctagagag 4595772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 396
Target Start/End: Complemental strand, 34905421 - 34905346
Alignment:
Q  323 acaaagtgatgagacatacattgattccattcaataaatgagtgggtgct--aaagagtgtcgaaaaatgagtgtt 396  Q
    |||||||| || |||||||||||||| ||| ||||||| ||||| ||| |  | ||||||| ||||||||||||||    
T  34905421 acaaagtggtgggacatacattgatttcatccaataaaagagtgagtgttagagagagtgttgaaaaatgagtgtt 34905346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 38464247 - 38464211
Alignment:
Q  324 caaagtgatgagacatacattgattccattcaataaa 360  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  38464247 caaagtgatgagacatacattgatttcatacaataaa 38464211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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