View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19643_low_10 (Length: 239)
Name: NF19643_low_10
Description: NF19643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19643_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 15375154 - 15375358
Alignment:
| Q |
18 |
aattgcacccttagactaggttttgtagtggacttgatagagttcttttttctacctcttagtaagttaaggcgtaaattgttctgtaggctcctccgtc |
117 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
15375154 |
aattgcacccttagactgggttttgtaatggacttgatagagttcttttttctacctcttagtaagttaaggcgtaaat-gttctaaaggctcctccgtc |
15375252 |
T |
|
| Q |
118 |
tctggaggcaaaaatctgtcgtatcaaattgatgtccttctgcaaaactgggcatatgggggttgctgcatgttatgagtatccagagcggtttcctgtg |
217 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15375253 |
tctggaggcaaaatt-tgtcgtatcaaattgatgtccttctacaaaactgggcatatgggggctgctgcatgttatgagtatccagagcggtttcctgtg |
15375351 |
T |
|
| Q |
218 |
aggatat |
224 |
Q |
| |
|
||||||| |
|
|
| T |
15375352 |
aggatat |
15375358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 28299254 - 28299458
Alignment:
| Q |
18 |
aattgcacccttagactaggttttgtagtggacttgatagagttcttttttctacctcttagtaagttaaggcgtaaattgttctgtaggctcctccgtc |
117 |
Q |
| |
|
|||| |||||||||| ||||||| ||| ||| ||||||||||||||||| | || || ||| ||||| |||||||||| ||||||||||||| | |
|
|
| T |
28299254 |
aattacacccttagatcaggttttttaggaaactcgatagagttcttttttccgcttcatactaaaataaggtgtaaattgttttgtaggctcctccacc |
28299353 |
T |
|
| Q |
118 |
tctggaggcaaaaatctgtcgtatcaaattgatgtccttctgcaaaactgggcatatggg-ggttgctgcatgttatgagtatccagagcggtttcctgt |
216 |
Q |
| |
|
|||||| ||||||| || |||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||| || | ||||| ||| |
|
|
| T |
28299354 |
tctggatccaaaaat-tgccgtaacaaattgatatccttctgcaaaactgggtatatgggcggttgctgcatgttttgagtatctggaacagtttcatgt |
28299452 |
T |
|
| Q |
217 |
gaggat |
222 |
Q |
| |
|
|||||| |
|
|
| T |
28299453 |
gaggat |
28299458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 28512819 - 28512615
Alignment:
| Q |
18 |
aattgcacccttagactaggttttgtagtggacttgatagagttcttttttctacctcttagtaagttaaggcgtaaattgttctgtaggctcctccgtc |
117 |
Q |
| |
|
|||| |||||||||| ||||||| ||| ||| ||||||||||||||||| | || || ||| ||||| |||||||||| ||||||||||||| | |
|
|
| T |
28512819 |
aattacacccttagatcaggttttttaggaaactcgatagagttcttttttccgcttcatactaaaataaggtgtaaattgttttgtaggctcctccacc |
28512720 |
T |
|
| Q |
118 |
tctggaggcaaaaatctgtcgtatcaaattgatgtccttctgcaaaactgggcatatggg-ggttgctgcatgttatgagtatccagagcggtttcctgt |
216 |
Q |
| |
|
|||||| ||||||| || |||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||| || | ||||| ||| |
|
|
| T |
28512719 |
tctggatccaaaaat-tgccgtaacaaattgatatccttctgcaaaactgggtatatgggcggttgctgcatgttttgagtatctggaacagtttcatgt |
28512621 |
T |
|
| Q |
217 |
gaggat |
222 |
Q |
| |
|
|||||| |
|
|
| T |
28512620 |
gaggat |
28512615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University