View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19643_low_11 (Length: 212)
Name: NF19643_low_11
Description: NF19643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19643_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 13567483 - 13567667
Alignment:
| Q |
9 |
gagtgagatgaagggatacaagacctctagatagtagaagcccactgcaatggacgaagagggcgatgcaagtgatgaaaggcttgcttagctgacagac |
108 |
Q |
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| T |
13567483 |
gagtgagaaggagggatacaagacctctggatagtagaagcccactgcaatggacgaagagggcgatgcaagtgatgaaaggcttgcttagttgacagac |
13567582 |
T |
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| Q |
109 |
ccccgtccggagagtgaatctaaatacggctatcaataagaggagataccggaagcgtgatgttcggaatgctcgctgtgtaatt |
193 |
Q |
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| T |
13567583 |
ccccgtccggagagtgaatctaaatacggctatcaataagaggagataccggaagcgtgatgttcggaatgctcgctgtgtaatt |
13567667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 24968447 - 24968593
Alignment:
| Q |
20 |
agggatacaagacctctagatagtagaagcccactgcaatggacgaagagggcgatgcaagtgatgaaaggcttgcttagctgacagacccccgtccgga |
119 |
Q |
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| T |
24968447 |
agggatacaagacctccagatagaagacgcctaccacaatggaggaggatggcaatgtaagtactgaaaatcttgcttagcagacacatcccagtctgta |
24968546 |
T |
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| Q |
120 |
gagtgaatctaaatacggctatcaataagaggagataccggaagcgt |
166 |
Q |
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| T |
24968547 |
gaatgaatccaaacacgcttatcaataagaggagttaccagaagcgt |
24968593 |
T |
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