View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19643_low_6 (Length: 304)
Name: NF19643_low_6
Description: NF19643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19643_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 38209710 - 38209435
Alignment:
| Q |
19 |
gttgttatttgaacgctaagaggatttagtttttacatgtgttacagttcactttattgtgacgttgatgaagatggaattaagtatttggtcttatgcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38209710 |
gttgttatttgaacgctaagaggatttagtttttacatgtgttacagttcactttattgtgacgttgatgaagatggaattaagtatttggtcttatgtc |
38209611 |
T |
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| Q |
119 |
gtgtcataatggggaaaatggaacttctttgtccaagcaatgaccaacgttgttcaagtggttatgaatatgaaaatggggtggatgacattcaaagccc |
218 |
Q |
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|||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38209610 |
gtgtcaaaatggggaaaatggagcttcttcgtccaagcaatgaccaacgttgttcaagtggttatgaatatgaaaatgaggtggatgacattcaaagccc |
38209511 |
T |
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| Q |
219 |
agagcactatgtggtttggaacatgaatataaacacacatatatatcatgaagactattacttttcccaccctatg |
294 |
Q |
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| T |
38209510 |
atagcactatgtggtttggaacatgaatataaacacacatatatatcccaaagactattacttttcccaccctatg |
38209435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 265
Target Start/End: Complemental strand, 12415801 - 12415596
Alignment:
| Q |
60 |
ttacagttcactttattgtgacgttgatgaagatggaattaagtatttggtcttatgccgtgtcataatggggaaaatggaacttctttgtccaagcaat |
159 |
Q |
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|||||||||||||| |||||| ||||| ||| |||| | ||| |||||||||||||||||||||||||||| ||| ||||| |||||| |||| | | | |
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| T |
12415801 |
ttacagttcacttttttgtgatgttgacgaaaatgggactaaatatttggtcttatgccgtgtcataatggagaatatggagcttcttcgtcctaatagt |
12415702 |
T |
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| Q |
160 |
gaccaacgttgttcaagtggttatgaatatgaaaatggggtggatgacattcaaagcccagagcactatgtggtttggaacatgaatataaacacacata |
259 |
Q |
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| T |
12415701 |
gatcaagttcgtccaagtggttatgagtatgataatggggtggataacattcaatgtccaaagtactatgttgtttggaatataaatataaacacgcata |
12415602 |
T |
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| Q |
260 |
tatatc |
265 |
Q |
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| |||| |
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| T |
12415601 |
tctatc |
12415596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 16512595 - 16512629
Alignment:
| Q |
269 |
aagactattacttttcccaccctatgcttctcctc |
303 |
Q |
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| T |
16512595 |
aagactattacttttcccaccctatgcttttcctc |
16512629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 257
Target Start/End: Complemental strand, 3129068 - 3128850
Alignment:
| Q |
38 |
gaggatttagtttttacatgtgttacagttcactttattgtgacgttgatgaagatggaattaagtatttggtcttatgccgtgtcataatggggaaaat |
137 |
Q |
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|||||||| |||||| ||||| | |||||||||||| |||||| | || | | ||||||||||| || || || |||| ||||||||||||||||| || |
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| T |
3129068 |
gaggattttgtttttccatgt-tcacagttcactttcttgtgatgaagacggaaatggaattaagcatatgttcctatgtcgtgtcataatggggaacat |
3128970 |
T |
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| Q |
138 |
ggaacttctttgtccaagcaatgaccaacgttgttcaagtggttatgaatatgaaaatggggtggatgacattcaaagcccagagcactatgtggtttgg |
237 |
Q |
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||| |||||| |||| |||| | | |||| | || |||||| || |||||||| ||||||||||||||||||||| ||||| || ||||||||| ||| |
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| T |
3128969 |
ggagcttcttcgtcctagcagtaaacaacttcgtccaagtgattgcgaatatgataatggggtggatgacattcaatgcccaaagtgctatgtggtgtgg |
3128870 |
T |
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| Q |
238 |
aacatgaatataaacacaca |
257 |
Q |
| |
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| T |
3128869 |
aatatgaatatgaacacaca |
3128850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 3291409 - 3291501
Alignment:
| Q |
173 |
caagtggttatgaatatgaaaatggggtggatgacattcaaagcccagagcactatgtggtttggaacatgaatataaacacacatatatatc |
265 |
Q |
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||||||||| ||||| || |||||||||| ||| ||||| ||||| || ||||||||| |||| ||||||||| ||||||||||| |||| |
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| T |
3291409 |
caagtggttgcgaatacgataatggggtggttgatgttcaacgcccaaagtgctatgtggtgtggatcatgaatatgaacacacatatctatc |
3291501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 440179 - 440151
Alignment:
| Q |
266 |
atgaagactattacttttcccaccctatg |
294 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
440179 |
atgaagactattacttttcccaccctatg |
440151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 29048182 - 29048210
Alignment:
| Q |
266 |
atgaagactattacttttcccaccctatg |
294 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
29048182 |
atgaagactattacttttcccaccctatg |
29048210 |
T |
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