View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19644_high_12 (Length: 228)
Name: NF19644_high_12
Description: NF19644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19644_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 6358902 - 6359020
Alignment:
| Q |
24 |
aggtacaaggaacagataaagcaaatttcaaccggaataaaatcactttcaaaagaagcttctaatccttcttctagtaacaatatcatttaacatttct |
123 |
Q |
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| T |
6358902 |
aggtacaaggaatagataaagcaaatttcaaccggaataaaatcactttcaaaagaagcttctaatccttcttctagtaacaatatcatttaacatttct |
6359001 |
T |
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| Q |
124 |
gactataacttgtacctgc |
142 |
Q |
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| T |
6359002 |
gactataacttgtacctgc |
6359020 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 214
Target Start/End: Original strand, 6359029 - 6359060
Alignment:
| Q |
183 |
ctttttatgtcttaccctttctgtatattctt |
214 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6359029 |
ctttttatgtcttaccctttctgtatattctt |
6359060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 32857586 - 32857478
Alignment:
| Q |
28 |
acaaggaacagataaagcaaatttcaaccggaataaaatcactttcaaaagaagcttctaatccttcttctagtaacaatatcatttaacatttctgact |
127 |
Q |
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|||||||| |||||||||||||| |||| | |||||||| || | | ||||||||||||| |||||||| | | || |||| |||||||||||||||| |
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| T |
32857586 |
acaaggaagagataaagcaaattgcaactgaaataaaatttctattagaagaagcttctaagccttcttccaatggcagtatcctttaacatttctgact |
32857487 |
T |
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| Q |
128 |
ataacttgt |
136 |
Q |
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| ||||||| |
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| T |
32857486 |
agaacttgt |
32857478 |
T |
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