View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19644_high_6 (Length: 376)
Name: NF19644_high_6
Description: NF19644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19644_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 41707489 - 41707839
Alignment:
| Q |
12 |
aagaaactattaactataattatgataa-taaaagtaaaattgcatagtgtattagaaaattacaccataaattaaaggaaggaataaagagacaaataa |
110 |
Q |
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| T |
41707489 |
aagaaactattaactataattatgataaataaaagtaaaattgcatagtgtattagaaaattacaccataaattaaaggaaggaataaaaagacaaataa |
41707588 |
T |
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| Q |
111 |
atgagagggatgatgatggaattacaatgaatgttggaagga-ggacgcgaaggagaccaaaatgcgaagaacagaagaaaaatgaagtatgaggaagga |
209 |
Q |
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| T |
41707589 |
atgagagggatgatgatggaattacaatgaatgttggaaggaaggacggggaggagaccaaaatgcgaagaacagaagaaaaatgaagtatgaggaagga |
41707688 |
T |
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| Q |
210 |
ataggaagtttaacaca--gatttaaattttaaatgagggaaagcatggaaatgtgaggtccatgaaattttcaagtggttcccccctccctagggaaag |
307 |
Q |
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| T |
41707689 |
ataggaagtttaacacaaagatttaaattttaaatgagggaaagcatggaaatgtgaggtccatgaaattttcaagtggttcccccctccctagggaaag |
41707788 |
T |
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| Q |
308 |
ttttgacattatttccttctgtcattcgtcaaatcagtttctagcatgaat |
358 |
Q |
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| T |
41707789 |
ttttgacattatttccttctgtcattcgtcaaatcagtttctagcatgaat |
41707839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 41717377 - 41717422
Alignment:
| Q |
12 |
aagaaactattaactataattatgataataaaagtaaaattgcata |
57 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
41717377 |
aagaaattattaactataattatgataataaatgtaaaattgcata |
41717422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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