View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19644_high_7 (Length: 357)
Name: NF19644_high_7
Description: NF19644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19644_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 28893464 - 28893806
Alignment:
| Q |
10 |
attatactagtactaatacataatttacagaaataaatattttattatagttactggttcttaattttatccatcatcatatac------------atac |
97 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28893464 |
attatactagtactaatacataatttacacaaataaatattttattatagttactggttcttaattttatccatcatcatatacatacatacatacatac |
28893563 |
T |
|
| Q |
98 |
atacttagatctacacagctatgatgaattatgctgtttcagcaggggttggctgcagaagtgtagaagaggagcctagaggctcatgcactacagaatt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28893564 |
atacttagatctacacagctatgatgaattatgctgtttcagcaggggttggctgcagaagtgtagaagaggagcctagaggctcatgcactacagaatt |
28893663 |
T |
|
| Q |
198 |
tgaagcaactgctataggatttccttccaactgcaacatgatactccccaatatttcagttaatattttcttgaattcttcttctttcaccaactttgca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28893664 |
tgaagcaactgctataggatttccttccaactgcaacatgatactccccaatatttcagttaatattttcttgaattcttcttctttcaccaactttgca |
28893763 |
T |
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| Q |
298 |
tcatctgcactcaccaacttgaacacttcaccaattaccttat |
340 |
Q |
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| T |
28893764 |
tcatctgcactcaccaacttgaacacttcaccaattaccttat |
28893806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 156 - 284
Target Start/End: Complemental strand, 55099325 - 55099197
Alignment:
| Q |
156 |
aagtgtagaagaggagcctagaggctcatgcactacagaatttgaagcaactgctataggatttccttccaactgcaacatgatactccccaatatttca |
255 |
Q |
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|||||||||||| | || || ||||||||| | || |||||||||| ||| || || ||| ||||||| |||||||||||||||||||||| ||||||| |
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| T |
55099325 |
aagtgtagaagatgcgcttaaaggctcatgtaaaactgaatttgaagaaacagcaatgggacttccttctaactgcaacatgatactccccagtatttca |
55099226 |
T |
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| Q |
256 |
gttaatattttcttgaattcttcttcttt |
284 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
55099225 |
attaaaattttcttgaattcttcttcttt |
55099197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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