View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19644_high_8 (Length: 249)
Name: NF19644_high_8
Description: NF19644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19644_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 45863600 - 45863362
Alignment:
| Q |
6 |
taaattattctactatgtaaactatcttctctcctgcatctcatgcttttggctgtgtcgaaaaactgccgatcactttaccacttaaggtgcaaggcca |
105 |
Q |
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| T |
45863600 |
taaattcttctactatgtaaactatcttctctcctgcatctcatgtttttggctgtgtcgaaaaactgccgatcactttaccacttaaggtgcaaggcca |
45863501 |
T |
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| Q |
106 |
tgcacttctctttagttcaatattgtaccctcaatttagagaagattatattggccaataataattaatataaaatggaaatattaatggaattctttta |
205 |
Q |
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| T |
45863500 |
tgcacttctctttagttc-atattgtaccctcaatttagagaagattatattggccaataataattaatataaaatggaaatattaatggaattctttca |
45863402 |
T |
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| Q |
206 |
aggaagctagatcgagatcattagacttaaaatccacaac |
245 |
Q |
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| T |
45863401 |
aggaagctagatcgagaccattagacttaaaacccacaac |
45863362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 30467430 - 30467326
Alignment:
| Q |
96 |
tgcaaggccatgcacttctctttagttcaatattgtaccctcaatttagagaagattatattggccaataataattaatataaaatggaaatattaatgg |
195 |
Q |
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| T |
30467430 |
tgcaaggacatgcatttctttttaattca-tattgtaccctcgatttagagaagattata------aataataattaatataaaatgaaaatattaatgg |
30467338 |
T |
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| Q |
196 |
aattcttttaag |
207 |
Q |
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| T |
30467337 |
aaattttttaag |
30467326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 30467547 - 30467464
Alignment:
| Q |
6 |
taaattattctactatgtaaactatcttctctcctgcatctcatgcttttggctgtgtcgaaaaactgccgatcactttaccactta |
92 |
Q |
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| T |
30467547 |
taaattcttccactatgtaaactatcttctctcc---atctcatggttttggcagtgtggaaaaactgccgatcactttatcactta |
30467464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 16648110 - 16648054
Alignment:
| Q |
125 |
atattgtaccctcaatttagagaagattatattggccaataataattaatataaaatg |
182 |
Q |
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| T |
16648110 |
atattgtaccgtcaatttagagaagattaaaatgaccaataataatt-atataaaatg |
16648054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 16648273 - 16648204
Alignment:
| Q |
6 |
taaattattctactatgtaaactatcttctctcctgcatctcatgcttttggctgtgtcgaaaaactgccgat |
78 |
Q |
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| T |
16648273 |
taaattcttccactacgtaaactgtcttctctcc---atctcatgtttttggctgtgtggaaaaactggcgat |
16648204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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