View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19644_low_1 (Length: 807)
Name: NF19644_low_1
Description: NF19644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19644_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 694; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 20 - 801
Target Start/End: Complemental strand, 49105124 - 49104340
Alignment:
| Q |
20 |
caggcagtgaccatcaatgccaatacatggagtagtgcaggtcatgttgttaaccaaatttatgacttactttacatgatggggagagatgatattgctg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49105124 |
caggcagtgaccatcaatgccaatacatggagtagtgcaggtcatgttgttaaccaaatttatgacttactttacatgatggggagagatgatattgctg |
49105025 |
T |
|
| Q |
120 |
ttggagttggaggagagggtggaatactaccaaatggtaccatactcccaaatgttggtggatatcttccaattatagatcaggtattagnnnnnnnnnc |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
49105024 |
ttggagttggaggagagggtggaatactaccaaatggtaccatactcccaaatgttggtggatatcttccaattatagatcaggtaatagtttttttttc |
49104925 |
T |
|
| Q |
220 |
---ccgttttcatactgtcaccgaatattgtgttatgagtcccacattaaaaagacattttatcgaagtaaataaatgcgcaacaattggggaagtgtat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49104924 |
ttcccgttttcatactgtcaccgaatattgtgttatgagtcccacattaaaaagacattttatcgaagtaaataaatgcgcaacaattggggaagtgtat |
49104825 |
T |
|
| Q |
317 |
tattaattcaataataattcttgttaatggattgtatctgacatatacgccacttgattgaattagggaatgacaacaacaggaggatgtagatacaggc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49104824 |
tattaattcaataataattcttgttaatggattgtatctgacatatacgccacttgattgaattagggaatgacaacaacaggaggatgtagatacaggc |
49104725 |
T |
|
| Q |
417 |
agaccattcctatagggcttggaggacgtttagatgtcgatgcaaactacggtatcaggaaagctttcctaccacaggtataatactaccgtgtaatata |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49104724 |
agaccattcctatagggcttggaggacgtttagatgtcgatgcaaactacggtatcaggaaagctttcctaccacaggtataatactaccgtgtaatata |
49104625 |
T |
|
| Q |
517 |
gcatgtggttacatgcgtgtatttatttatgaatttaattaatagtattatacagacatccaatcacattatatttcaacatcaattannnnnnnccata |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49104624 |
gcatgtggttacatgcgtgtatttatttatgaatttaattaatagtattatacagacatccaatcacattatatttcaacatcaattatttttttccata |
49104525 |
T |
|
| Q |
617 |
caatatgattaggaatcatgtttacaccattagtgtcccacttacataggccnnnnnnnagagcaagtaccataaattttttcaaagattcaataatata |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49104524 |
caatatgattaggaatcatgtttacaccattagtgtcccacttacataggcctttttttagagcaagtaccataaattttttcaaagattcaataatata |
49104425 |
T |
|
| Q |
717 |
gtttataaaattcagaaacttatttaagaatttttaaatggttcaaggacctttgatatagttaaaccttatttatattcttgga |
801 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49104424 |
gtttataaaattcagaaacttatttaagaatttttaaatggttcaaggacctttgatatagttaaaccttatttatattgttgga |
49104340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 18133813 - 18133629
Alignment:
| Q |
20 |
caggcagtgaccatcaatgccaatacatggagtagtgcaggtcatgttgttaaccaaatttatgacttactttacatgatggggagagatgatattgctg |
119 |
Q |
| |
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|||||||||||||||| ||| |||| |||| ||||||||| |||| ||| ||||||||||||||||| || ||||||||||||||||||||| |||||| |
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| T |
18133813 |
caggcagtgaccatcagtgcaaatagctggactagtgcagggcatgctgtgaaccaaatttatgacttgctgtacatgatggggagagatgatgttgctg |
18133714 |
T |
|
| Q |
120 |
ttggagttggaggagagggtggaatactaccaaatggtaccatactcccaaatgttggtggatatcttccaattatagatcaggt |
204 |
Q |
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||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
18133713 |
ttggaattggtggtgagggtggaatactgtcaaatggtaccatactcccaaatgttggtggatatctaccaattatagaacaggt |
18133629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 49121023 - 49120839
Alignment:
| Q |
20 |
caggcagtgaccatcaatgccaatacatggagtagtgcaggtcatgttgttaaccaaatttatgacttactttacatgatggggagagatgatattgctg |
119 |
Q |
| |
|
|||||||||||||||| ||| |||| |||| ||||||||| |||| ||| ||||||||||||||||| || ||||||||||||||||||||| |||||| |
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| T |
49121023 |
caggcagtgaccatcagtgcaaatagctggactagtgcagggcatgctgtgaaccaaatttatgacttgctgtacatgatggggagagatgatgttgctg |
49120924 |
T |
|
| Q |
120 |
ttggagttggaggagagggtggaatactaccaaatggtaccatactcccaaatgttggtggatatcttccaattatagatcaggt |
204 |
Q |
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||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
49120923 |
ttggaattggtggtgagggtggaatactgtcaaatggtaccatactcccaaatgttggtggatatctaccaattatagaacaggt |
49120839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 373 - 497
Target Start/End: Complemental strand, 49117140 - 49117016
Alignment:
| Q |
373 |
attgaattagggaatgacaacaacaggaggatgtagatacaggcagaccattcctatagggcttggaggacgtttagatgtcgatgcaaactacggtatc |
472 |
Q |
| |
|
||||||| ||||||||||||||| |||||| || |||||||||||| ||||||| |||| ||||||||||| |||||| | |||||||| || |||||| |
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| T |
49117140 |
attgaatcagggaatgacaacaataggaggctgcagatacaggcaggccattcccgtaggacttggaggacgcttagatattgatgcaaattatggtatc |
49117041 |
T |
|
| Q |
473 |
aggaaagctttcctaccacaggtat |
497 |
Q |
| |
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|||||| ||||||| |||||||||| |
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| T |
49117040 |
aggaaatctttcctcccacaggtat |
49117016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 6954982 - 6955108
Alignment:
| Q |
80 |
tatgacttactttacatgatggggagagatgatattgctgttggagttggaggagagggtggaatactaccaaatggtaccatactcccaaatgttggtg |
179 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||||||||||||||| || |||||||||| |
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| T |
6954982 |
tatgacatactttacatgatggggagagatgacattgctgttggagtgggaggtgaaggtggaattctcccaaatggtaccatacttcctaatgttggtg |
6955081 |
T |
|
| Q |
180 |
gatatcttccaattatagatcaggtat |
206 |
Q |
| |
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||||||||||||||||||| ||||||| |
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| T |
6955082 |
gatatcttccaattatagaacaggtat |
6955108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 6964710 - 6964791
Alignment:
| Q |
80 |
tatgacttactttacatgatggggagagatgatattgctgttggagttggaggagagggtggaatactaccaaatggtacca |
161 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||||||||||| |
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| T |
6964710 |
tatgacatactttacatgatggggagagatgacattgctgttggagtgggaggtgaaggtggaattctcccaaatggtacca |
6964791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 6965185 - 6965232
Alignment:
| Q |
159 |
ccatactcccaaatgttggtggatatcttccaattatagatcaggtat |
206 |
Q |
| |
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||||||| |||||||||||||||||||||||||| || || ||||||| |
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| T |
6965185 |
ccatacttccaaatgttggtggatatcttccaatcattgaacaggtat |
6965232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 501
Target Start/End: Original strand, 6965795 - 6965926
Alignment:
| Q |
370 |
ttgattgaattagggaatgacaacaacaggaggatgtagatacaggcagaccattcctatagggcttggaggacgtttagatgtcgatgcaaactacggt |
469 |
Q |
| |
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|||||| ||| |||||||||||||| |||||| || ||||| |||||| |||| ||| | || ||||||| || || ||| ||||| | ||||| || |
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| T |
6965795 |
ttgattcaatcagggaatgacaacagcaggagattgcagatataggcaggccatacctgttggttttggaggtcgcttggatatcgatactaactatggc |
6965894 |
T |
|
| Q |
470 |
atcaggaaagctttcctaccacaggtataata |
501 |
Q |
| |
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||| | ||||||||||| |||| ||||||||| |
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| T |
6965895 |
atccgtaaagctttccttccacgggtataata |
6965926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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